Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0070 ATGGCTACTTTAAACTTAGGCTCTGCTTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACCTAGAATCTCCCCCAACTTCTGACCATGTCAACCACTTCAACGGCAGCGGCGGCTCCGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCACGGGGTCGCCCGGCCGGCTCCAAGAACAAGCCCAAGCCACCCGTGATCATCACGCGCGAGAGCGCCAACACACTCCGAGCTCATATCTTGGAGGTCGGTGGTGGATGCGACGTCTTCGAGGCGGTGGCCGGCTATGCTCGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGGAGTGGGATTGTGAATAATGTTAGCTTGCGACAACCGGCGGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCGGGATCGTTCCTACCGCCGCCTGCTCCGCCAGGTGCTACCAGTCTTACAATTTTCTTGGCCGGAGGACAAGGGCAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCGGTCATCGTCATAGCATCGTCATTTAGTAACGTTGCATACGAGAGGTTGCCGTTGGATGAAGAAGAATTGCCGATGCAGGCGGGTGGAGGCGATGGTGACGGAGGCGACGGTGGCGGTGACGGTCACAACAACCCTTTTCCTGATGCATCTTCGGGTTTGCCGTTTCTAAATCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA 759 56.65 MATLNLGSASHFVDQLQQRPDLHLESPPTSDHVNHFNGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGGDGDGGDGGGDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 851304 852420 + ClG42_06g0007000.10 Clacu06g0070 250718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0070 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 208 - -
Clacu06g0070 252 Gene3D - 78 208 - -
Clacu06g0070 252 CDD DUF296 79 162 IPR005175 -
Clacu06g0070 252 FunFam AT-hook motif nuclear-localized protein 78 205 - -
Clacu06g0070 252 MobiDBLite consensus disorder prediction 205 240 - -
Clacu06g0070 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 191 IPR005175 -
Clacu06g0070 252 MobiDBLite consensus disorder prediction 22 68 - -
Clacu06g0070 252 PIRSF ESCAROLA 4 250 IPR014476 GO:0003680(InterPro)
Clacu06g0070 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 214 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu06g0070 252 ProSiteProfiles PPC domain profile profile. 75 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0070 Clacu-Chr6:851304 Clacu10g0174 Clacu-Chr10:2032372 5.80E-78 dispersed
Clacu05g0296 Clacu-Chr5:2562919 Clacu06g0070 Clacu-Chr6:851304 2.50E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0070 - - - 0.0