Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0092 ATGATTAAGGGCTTTCTTCACCAACTTCAGCTTTCTTCTCCTCCAACCGAGATGGAAGTGCAAGATCATGGTCACATAATTGAAGTATGTGGAGATGTGCAAGCTGTAGGGCCTAGCACTGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAAAAGCAGTTCAAAAGATGCAAAGGAGCGATCTGCGTCTATGCGGAAGCTTTGCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTATTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCACGTCAGTCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTTGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATCGTCCGACTTATAAATGGTCCGGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCGACATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGAGCATGGCCATGGTCATGGCGGCCATGAACATGGTGATGAAGATCATAGGCATCATCATGGAATAAGTGTGACCACCCACCACCATCACCACCACCACCACCACCATGGAGAAGAGAAGGGAGCTGGCAACGAAGGTGTTGAGCAGGAGCAGCAGCAGCAGCAGCATGACCACAAGGAATCAGTAGCTACACCCTTGCTTGAGAGTTGTGTTGACGACGGAAATCCTTCACGAAAGGTTACCAAGACGCAAAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGCGGGGCAATCATATGGTATAAACCGGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTGTGCACAACAATTCAAATGCTTCGAAATATCCTCGAGGTTTTGATGGAGAGCACGCCGCGAGAGGTGGACGCAACAAAGCTTGAGAAGGGTTTGTGCGAGATGGAGGAGGTAGTTGCAATCCATGAACTGCACATATGGGCCATAACTGTTGGGAAGATTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCCGACATGGTATTGGACAAGGTTATTGAGTATATTAGGAGAGAGTACAACATCAGCCATGTCACCATTCAGATAGAGCGCCAGTAG 1338 46.04 MIKGFLHQLQLSSPPTEMEVQDHGHIIEVCGDVQAVGPSTVGSKICGDAPSCGFSDAKSSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHSHGHGEHGHGHGGHEHGDEDHRHHHGISVTTHHHHHHHHHHGEEKGAGNEGVEQEQQQQQHDHKESVATPLLESCVDDGNPSRKVTKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMEEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1039104 1045506 - ClG42_06g0009200.10 Clacu06g0092 250740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0092 445 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 374 443 IPR036837 -
Clacu06g0092 445 MobiDBLite consensus disorder prediction 251 274 - -
Clacu06g0092 445 NCBIfam cation diffusion facilitator family transporter 71 445 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu06g0092 445 MobiDBLite consensus disorder prediction 214 234 - -
Clacu06g0092 445 MobiDBLite consensus disorder prediction 235 250 - -
Clacu06g0092 445 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 40 444 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Clacu06g0092 445 Pfam Cation efflux family 75 366 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu06g0092 445 Gene3D Cation efflux protein transmembrane domain 70 365 IPR027469 -
Clacu06g0092 445 MobiDBLite consensus disorder prediction 201 274 - -
Clacu06g0092 445 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 367 IPR027469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0117 Clacu-Chr3:1317261 Clacu06g0092 Clacu-Chr6:1039104 4.30E-72 dispersed
Clacu06g0092 Clacu-Chr6:1039104 Clacu10g1455 Clacu-Chr10:27710429 9.80E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0092 K14689 - csv:101213602 637.876