Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0097 ATGGGCAAATGCGAAGATTCAGATTCTTCTGTCAATGGTGAAGAACTTGATGAAATGAGCAAAGTTAGGGTTTCTGAATCAGATGGGGATTTTCTTACTTGGGAGCTCCCACATCCACAAACCAATCGAGCTTCACAGCCACACAAATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTTTCTCTATCCCCTTCTTTCTCCGTTTTTATTCTCAAACACCCACTTTCCCTTCTTCTTCTCTTCCATTTTCTCTTCCATCTCTCCGGCGGTTGTGTTCTAGCGGCGTTAGGAGTTACTGTTTTTCATCAGAAGTTCATGGGTTCGTTGATCTTCGAGTAGGAAAGGGGGGAAGAGGGGTTTCCGGGAATTTATTGAAAATTGGTGTGGTAGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGATGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCGGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACGTCACACTCAGGTAGTGCACTTGCATGCAGACCGACGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGATGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 1209 45.57 MGKCEDSDSSVNGEELDEMSKVRVSESDGDFLTWELPHPQTNRASQPHKWRPLFSALLSPPSFLILISLNLNPYHLTLLDPPQSSAIYSSFSIPFFLRFYSQTPTFPSSSLPFSLPSLRRLCSSGVRSYCFSSEVHGFVDLRVGKGGRGVSGNLLKIGVVVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPTKSSISYKKPRIEMVDDEEFFTVPDLG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1063289 1068641 - ClG42_06g0009700.10 Clacu06g0097 250745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0097 402 ProSiteProfiles Zinc finger B-box type profile. 165 212 IPR000315 GO:0008270(InterPro)
Clacu06g0097 402 MobiDBLite consensus disorder prediction 1 21 - -
Clacu06g0097 402 CDD Bbox1_BBX-like 221 263 IPR049808 -
Clacu06g0097 402 Pfam B-box zinc finger 168 210 IPR000315 GO:0008270(InterPro)
Clacu06g0097 402 Pfam B-box zinc finger 218 260 IPR000315 GO:0008270(InterPro)
Clacu06g0097 402 Gene3D Classic Zinc Finger 165 263 - -
Clacu06g0097 402 CDD Bbox1_BBX-like 170 212 IPR049808 -
Clacu06g0097 402 SMART bboxneu5 217 264 IPR000315 GO:0008270(InterPro)
Clacu06g0097 402 SMART bboxneu5 165 212 IPR000315 GO:0008270(InterPro)
Clacu06g0097 402 MobiDBLite consensus disorder prediction 279 300 - -
Clacu06g0097 402 ProSiteProfiles Zinc finger B-box type profile. 217 264 IPR000315 GO:0008270(InterPro)
Clacu06g0097 402 PANTHER B-BOX ZINC FINGER PROTEIN 22 166 401 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0097 Clacu-Chr6:1063289 Clacu07g1009 Clacu-Chr7:24510854 9.70E-35 dispersed
Clacu06g0097 Clacu-Chr6:1063289 Clacu08g1617 Clacu-Chr8:25959372 1.10E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47825 PF00643 zf-B_box 1.40E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0097 - - - 0.0