Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0105 ATGATGAGAGAGAGAAGAAGTTGTGTTGTTGTATCCCTTGTGGGTATAGCATTATTGATGAGTTTATCCATTGTGAGAGGTGAAAATACATTACAATCACCAGTTAAGCTGGTATGGCATTACTACAAGCTCAACGCAACTTGCCCTTATGCTGAGGAATACATAAAGCATCAAGTCAAGTTGTTTTGGGACAAGGATAAGAGCATTGCTGCCAAGTTCCTTCGTTTGCTCTCTGCAGATTGCCTTTCCAAAAACGGTTGTGACGGCTCAATACTTCTTGACGGTCCAAATTCAGAGAAAAATGCACCACAAAACCAAGGCCTTGGAGGGTTTGAAGAGATTGACAAGATCAAAATTGTACTCGAAGAAAGATGTCCGGGTGTTGTTTCTTGTACAGACATTTTAAACCTAGCCACTAGAGATGCTGCCCATTTGGCAGGTGCACCATCTTATCCAGTTTTTACTGGGAGGAGGGATGGTTTTACAAGTAGTATTGATGCAGTGGATTTACCATCTCCCTCCATATCATGGCAAGAAGGACTTAATTATTTTCAATCTAAAGGTCTTGATGTTTTGGACATGACAACACTCCTAGGTGCACATTCAATGGGAAAAACACACTGTCGATACATCATGGATAGGCTATACAATTTCAAAGGCACAAAAAAACCCGATCCATCAATGGACAAATCATTGTTAAAACAGCTTCAAAAGAAATGCCCCAAAAATTCAAAAACAGACCCAACAGTGAATCTAACACCAAAATCTGGAAATGACTATCAATTCACAAGTCTTTACTACTCGAGAATTCTTTCGAAAAAGGCGGTCCTCGGTCTCGATCAACAGCTTCTTTTCGGTAACGACACAAATGAAATTGTCCAGGAATTTGCTCCAGAATCTGGATTTGAAGACTTTCGTCGGTCCTTTGCTTTGTCTATGAGTAGGATGGGAAATATCAAGGTTTTGACTGGAAAAGATGGCGAGATTCGACGACATTGTCGCCGAAGAAACTAG 1014 40.63 MMRERRSCVVVSLVGIALLMSLSIVRGENTLQSPVKLVWHYYKLNATCPYAEEYIKHQVKLFWDKDKSIAAKFLRLLSADCLSKNGCDGSILLDGPNSEKNAPQNQGLGGFEEIDKIKIVLEERCPGVVSCTDILNLATRDAAHLAGAPSYPVFTGRRDGFTSSIDAVDLPSPSISWQEGLNYFQSKGLDVLDMTTLLGAHSMGKTHCRYIMDRLYNFKGTKKPDPSMDKSLLKQLQKKCPKNSKTDPTVNLTPKSGNDYQFTSLYYSRILSKKAVLGLDQQLLFGNDTNEIVQEFAPESGFEDFRRSFALSMSRMGNIKVLTGKDGEIRRHCRRRN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1162004 1166394 + ClG42_06g0010500.10 Clacu06g0105 250753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0105 337 FunFam Peroxidase 171 316 - -
Clacu06g0105 337 Pfam Peroxidase 56 297 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 ProSiteProfiles Plant heme peroxidase family profile. 36 337 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 Gene3D - 41 337 - -
Clacu06g0105 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Clacu06g0105 337 PRINTS Haem peroxidase superfamily signature 70 84 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Haem peroxidase superfamily signature 129 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Plant peroxidase signature 48 67 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Plant peroxidase signature 128 138 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0105 337 PANTHER PEROXIDASE 25-RELATED 40 333 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu06g0105 337 CDD secretory_peroxidase 36 335 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu06g0105 337 Gene3D Peroxidase, domain 2 171 316 - -
Clacu06g0105 337 SUPERFAMILY Heme-dependent peroxidases 43 337 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0105 Clacu-Chr6:1162004 Clacu09g2287 Clacu-Chr9:37639997 1.70E-53 dispersed
Clacu06g0105 Clacu-Chr6:1162004 Clacu01g1246 Clacu-Chr1:20864889 1.30E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0105 K00430 - csv:101213667 585.489