Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0130 ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGCCCAGCGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAACACGAATCTGCTTGTTACTATAGACCATATACCTGTCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGAAACCCTCGAAGCATTCGGGACAACCACAAAAAAGTCAGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.57 MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPACRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1423538 1426252 + ClG42_06g0013000.10 Clacu06g0130 250778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0130 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 296 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Clacu06g0130 304 SUPERFAMILY RING/U-box 47 93 - -
Clacu06g0130 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515(InterPro)
Clacu06g0130 304 CDD RING-HC_SIAHs 51 89 - -
Clacu06g0130 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 53 88 IPR049548 -
Clacu06g0130 304 Pfam Sina, TRAF-like domain 197 294 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Clacu06g0130 304 SUPERFAMILY TRAF domain-like 106 298 - -
Clacu06g0130 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 105 IPR013083 -
Clacu06g0130 304 Pfam Sina, zinc finger 102 177 - -
Clacu06g0130 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Clacu06g0130 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270(InterPro)
Clacu06g0130 304 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Clacu06g0130 304 CDD Sina 167 295 - -
Clacu06g0130 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Clacu06g0130 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1242 Clacu-Chr5:11812908 Clacu06g0130 Clacu-Chr6:1423538 1.70E-22 dispersed
Clacu05g2878 Clacu-Chr5:35942165 Clacu06g0130 Clacu-Chr6:1423538 1.30E-124 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0130 K04506 - csv:101209363 647.891