Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0147 ATGATGGCTTGCGTAGAGCCGATAGCGCCATTGTTGTGCTACTCGACCATATGGCGACTTTCTTGTGCCCACCATGGAACGCTGACGGACAAGCGCAGACTCTTACGAATTTGTTTCACTGATCTCTCTCTTGCTTCTTGGGTTCTCGTGGGTCGAATCGATCTTCAAGGTTTTTCCCTCCTCGTTTCTGTTTACTTGATTGGCAGGGATTTGTTTGCTTTGTGTATTCATGTTTCCTACGGAATAGCAGGCACTTTTGTCTTTTGGATCGAAATAAATATGGCACCGCCTCGGGTTTCAAAAGCTTTTCGTGCAATGAGGGATATTGGGATCAGTGAAGATAAGACAAAACCAGTCTTAAAGAAACTCCTGAAATTGTATGATAAGAACTGGGAACTTATTGAAGAAGAGAACTATAGAGTTCTTGCAGATGCAATATTTGATGAGGAAGATAGTAAGGTTGTAGAAGAGAAGAAATGTCAGAATTCTCAAGTGGAAGATTTTGGGGAAGATGTTCAGGGGCCTGATGAGCCAGAACGCCCTCTGAAAAGGTTGCGCTTAAGAGGCCAAGAAACCCAGGTTGATGGGATGGCTTTAAAAAAGCCCAAATTGGAAGAGGATGCGTTTCCTGAAACCAGTTCCCAACAGCAGATGCAGTTAAGTGGGCCTAAGAGATCTGAAACTGGTCCAAGTTCTTCTCGTCGTGTAGACAAAGGGAAGGAACCTGTATCACCCCGTGTGGTTACGAGAGTGAAAAAATCTAGCCTAGAGAAATCATCTGCTTCTGTTCGTATTAAGGAACCAGGGGCTGAGTCAGGTGTCAAAAATTCCATAGTGAGGGCATCTGGGTCTCTTGCGTTGCTCAAACCTAAAGATGAACCAATTACTGACGATGCATTTACAAATGAGTTGCCTATTGCTGCGATTCATCCAGATTCTTCAAGAAAAGAAGATCATTCCATTGCAAATGATTCAGTTAGGAAGGCAGATGGCCAAGTTGCTCAAGTATCATATCCTTCAGACGGAAGTAACAAAGGTGATGGTACGGAAACATCATCATGTAAGAGGATTACAGGCAGTGAGCTTGCAACTGTTATGGAAGAATTACATCCTAACTTAGAGATTGCATCGTCGCCACTGGGAGAGGTAAAAATTTCTTTGTGCTGCGACTCCACTTTTGGACGACCAGATTTCCGTATGCCTAGTCGTGATGCAGTTATAAAATATATGGAGGAAAAATGTCTGCAGTCATATAAAATCATTGACCCCACGTTTTCTGTTATGAAACTGTTGAGTGATATGTGTGAGTGCTTCTTGGAATTGGGAACTGATTCTCCTGATGAACAACAGGAAGGTTCAATTAGTAGAGTTCCACTTCTAGATGTAATGGAGAGTTCAGATCCAATGGATACTCCAGGGACTGTTGCCAATGAAGGAAATTTGGATCTACGCACTTCTGTGAATGAACCAGTCAATACTATCTCTGATGGAGAACTTGCACCACAAGTCCCTAGTATGGTAGAGTCTTCAAGTGTTTCCAATCACCAGACTATCCATGAAACCTCTAAAAGCAGCAAAGAAATACCAAATGGTCATTCTGAAGATGAAGCGAGGAAGGAGTTTGATAATCTTGAGCCTGCAAATCCGCAGAATTTGATGGTTGTTTCACAGAGTCAACAAGCTACTGATGAATTAAGCTTCTCTCATGATGTGGTTGATATAGCCAAGGGAGAAGAAAGGGTTCAAATTTCTTGGGTGAATGAAATTAATAAAGAGCATCCACCATTCTTTCACTATATACCTCGCAGTCTAATATTCCAAAATGCTTTTGTAAATTTCTCTCTCTCTCTGATTGGTAATGATAATTGTTGCCAGTCTTGTTTTGGAAATTGCCTTACATCTTCTGTCCCTTGTGCTTGTGCACGGGAAACTGGGGATAAGTATGCATACACACCAGAAGGTCTTGTTAAGGAAGATTTTTTGGATGAGTGGACCTCTCTTGCTCGTGAATCTCAAGGAAACCACCAGTTCTATTGCAAAGAGTGTCCTCTTGAAAGATCAAAGAATGATAATTGTTTAGAACCCTGCAAAGGCCACTTAGAGAGGAAGCTTATAAAAGAATGTTGGAGTAAATGTGGTTGCAATAAGCATTGTGGCAATAGAGTGGTGCAGCGAGGAGTAAAGTGCAAGTTGCAGGTATTTTTTACTTCCGAAGGAAAAGGATGGGGCCTTCGAACCCTTGAAGACCTACCTAAAGGCTCTTTTGTTTGTGAATATGCCGGAGAAATATTAACCATTTCAGAAATGTATCATAGAAAGGTGCAAAGCACCAAAAATGGGGAGCATACCGACCCAGTATTATTAGATGGCTTTTGGAATAAAGAAGGGCCTTTGAAGGAGGAAAAAGCTCTCTGCTTGGATGCAACAAACTTTGGGAACGTTGCCAGATTTATCAATCACAGATGCTTTGATGCAAACTTGGTTGACATAGCAGTTGAGATAGAGACTCCGGATCATCATAATTATCATCTTGCCTTATTCACTACAAGAAAAATAGATGCCATGGAAGAGCTAACTTGGGATTATGGAATCGATTTTGATGATCTTGATCATCATGTTAAGCCATTTCTCTGTCAATGTGGCAGCAAGTTCTGCAGAAATATGAAACGATCTTCTAATGATTGTGCTTTATCTGTGCATTTTATGGTGATTGGTAAATGTAAACTGCTGGAAGCCCCAATAATCAATATCGTTTTTGAAGACGATGGTTCGGTTTGGGTAGTAAAGCTGAGGATCGATCACAGATTCACATTATGCTTTTTTGCTCGGCCGCGGGAGGGAAGCCAAAGTCCATCAACAATGTCGAAGCGAGGAAGGGGAGGATCCGCAGGGAACAAGTTTCGGATGTCACTGGGTCTTCCGGTGGCTGCTACTGTCAACTGTGCAGACAATACGGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGATCAAAGGTCGCCTCAATAGGTTGCCATCCGCATGTGTCGGTGATATGGTTATGGCCACCGTTAAGAAAGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCGTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTTATCGTCAATCCCAAGGGCGAGATGAAAGGTTCGGCTATTACTGGCCCCATCGGAAAGGAATGCGCTGATCTCTGGCCAAGGATTGCAAGTGCTGCGAATGCCATCGTCATTGGTATCGGCATCGGCATCGACATTGGTTTTGGTCTTGGCCTGTCTCTAAAGACATGGCTGGCTTGGTCACTGGTTCCCAACACTATCCCCACGAGTCTTCGTGGACCTCCACTATCGTCGAAAATATGTCGAATTTGCAGTGATGAAATAGGACTAAAACAAGATGGAAAAGTATTTGTGGCATGTCTTGTGTGCAATTTCCCTGTTTGTCGACCTTGTTATGAGTATGAAAGGAGCGAAGGCAATAGGTGTTGTCCCCAATGCAACACTCGCTATAAGCGTCACAAAGGCTCACCCAGAGTGATCGGCGACGAGGAAGAAGGTGACGATGCCGATGATTTTGACGATGAGTTCCCCATGAAACACCACAACAATGACGAATTTGAAACAAAGCAGCCTAATCATTCGGAAAACGATAACTACAATGAGCAGAATTGGCATAAAAATGTTCAGAATTCGTTCTCAGTTGCTGGAAGTGTGAATGGGAAGGATATGGAAGGGGAAAAAGAGGGTTATGGAAGTGTAGAATGGAAGGAGAGAATTGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAAGAAGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCAGAAGCCCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCAAGCAAAATCAGTCCATATCGCATCGTCATTGTCCTCCGCCTCATAATTCTTGCATTCTTCTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCCTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAAATTTGGTTCGGCTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTAGATCGCCTCTCCATGCGCTTCGAGCGCGACGGCGAGCCCAACCGCCTCTCACCGATCGACTTCTTCGTCAGCACGGTGGACCCTCTGAAAGAGCCGCCGATCATAACCGCCAACACCGTCCTTTCCATCCTCTCGGTCGACTATCCGGTGGAGAAGGTCAGCTGCTACGTATCGGACGATGGAGCGTCGATGCTGCTGTTCGATACGCTGGCGGAGACTGCGGAGTTTGCTCGGAGATGGGTGCCGTTTTGCAAGAAGTTCAGTATCGAACCTAGGGCTCCGGAGTTCTATTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGGCTAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGACGTGGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCGTTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGAAATCAAAATCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCGCCGGGACCAGTTTTTGA 4980 44.72 MMACVEPIAPLLCYSTIWRLSCAHHGTLTDKRRLLRICFTDLSLASWVLVGRIDLQGFSLLVSVYLIGRDLFALCIHVSYGIAGTFVFWIEINMAPPRVSKAFRAMRDIGISEDKTKPVLKKLLKLYDKNWELIEEENYRVLADAIFDEEDSKVVEEKKCQNSQVEDFGEDVQGPDEPERPLKRLRLRGQETQVDGMALKKPKLEEDAFPETSSQQQMQLSGPKRSETGPSSSRRVDKGKEPVSPRVVTRVKKSSLEKSSASVRIKEPGAESGVKNSIVRASGSLALLKPKDEPITDDAFTNELPIAAIHPDSSRKEDHSIANDSVRKADGQVAQVSYPSDGSNKGDGTETSSCKRITGSELATVMEELHPNLEIASSPLGEVKISLCCDSTFGRPDFRMPSRDAVIKYMEEKCLQSYKIIDPTFSVMKLLSDMCECFLELGTDSPDEQQEGSISRVPLLDVMESSDPMDTPGTVANEGNLDLRTSVNEPVNTISDGELAPQVPSMVESSSVSNHQTIHETSKSSKEIPNGHSEDEARKEFDNLEPANPQNLMVVSQSQQATDELSFSHDVVDIAKGEERVQISWVNEINKEHPPFFHYIPRSLIFQNAFVNFSLSLIGNDNCCQSCFGNCLTSSVPCACARETGDKYAYTPEGLVKEDFLDEWTSLARESQGNHQFYCKECPLERSKNDNCLEPCKGHLERKLIKECWSKCGCNKHCGNRVVQRGVKCKLQVFFTSEGKGWGLRTLEDLPKGSFVCEYAGEILTISEMYHRKVQSTKNGEHTDPVLLDGFWNKEGPLKEEKALCLDATNFGNVARFINHRCFDANLVDIAVEIETPDHHNYHLALFTTRKIDAMEELTWDYGIDFDDLDHHVKPFLCQCGSKFCRNMKRSSNDCALSVHFMVIGKCKLLEAPIINIVFEDDGSVWVVKLRIDHRFTLCFFARPREGSQSPSTMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIVIGIGIGIDIGFGLGLSLKTWLAWSLVPNTIPTSLRGPPLSSKICRICSDEIGLKQDGKVFVACLVCNFPVCRPCYEYERSEGNRCCPQCNTRYKRHKGSPRVIGDEEEGDDADDFDDEFPMKHHNNDEFETKQPNHSENDNYNEQNWHKNVQNSFSVAGSVNGKDMEGEKEGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLIILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLSPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSQKMDYLKDKVLASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAEIKIQEERRKRFAWRPVQEEENDGEELCKESAGTSF 1659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1658296 1683228 + ClG42_06g0014700.10 Clacu06g0147 250795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 158 274 - -
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 1640 1659 - -
Clacu06g0147 1659 SMART Ribosomal_L14_2 972 1093 IPR000218 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 504 536 - -
Clacu06g0147 1659 FunFam 60S ribosomal protein L23 954 1093 - -
Clacu06g0147 1659 ProSiteProfiles SET domain profile. 729 863 IPR001214 GO:0005515(InterPro)
Clacu06g0147 1659 SMART preset_2 571 713 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 336 354 - -
Clacu06g0147 1659 ProSitePatterns Ribosomal protein L14 signature. 1032 1058 IPR019972 -
Clacu06g0147 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1126 1210 IPR013083 -
Clacu06g0147 1659 FunFam SET-domain containing protein lysine methyltransferase family protein 574 888 - -
Clacu06g0147 1659 Pfam Ribosomal protein L14p/L23e 975 1093 IPR000218 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 174 190 - -
Clacu06g0147 1659 Gene3D Ribosomal protein L14 954 1093 IPR036853 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu06g0147 1659 Gene3D SET domain 574 888 IPR046341 -
Clacu06g0147 1659 SUPERFAMILY RING/U-box 1132 1208 - -
Clacu06g0147 1659 CDD SET_SETDB-like 595 863 - -
Clacu06g0147 1659 Pfam Zinc-binding RING-finger 1132 1203 IPR027934 -
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 312 354 - -
Clacu06g0147 1659 SUPERFAMILY Ribosomal protein L14 964 1093 IPR036853 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu06g0147 1659 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 97 893 - -
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 209 229 - -
Clacu06g0147 1659 SMART set_7 729 869 IPR001214 GO:0005515(InterPro)
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 230 260 - -
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 504 519 - -
Clacu06g0147 1659 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 70 920 IPR025776 -
Clacu06g0147 1659 Gene3D - 90 152 IPR043017 -
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 1190 1237 - -
Clacu06g0147 1659 Pfam Cellulose synthase 1406 1623 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Clacu06g0147 1659 CDD mRING-HC-C4C4_CesA 1135 1185 - -
Clacu06g0147 1659 Coils Coil 1504 1524 - -
Clacu06g0147 1659 ProSiteProfiles Pre-SET domain profile. 630 726 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 520 536 - -
Clacu06g0147 1659 Hamap Large ribosomal subunit protein uL14 [rplN]. 972 1093 IPR000218 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu06g0147 1659 Pfam Ubiquitin-binding WIYLD domain 98 151 IPR018848 -
Clacu06g0147 1659 SUPERFAMILY SET domain 581 886 IPR046341 -
Clacu06g0147 1659 MobiDBLite consensus disorder prediction 1209 1230 - -
Clacu06g0147 1659 Pfam SET domain 741 863 IPR001214 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0147 Clacu-Chr6:1658296 Clacu11g1317 Clacu-Chr11:22466230 1.50E-182 dispersed
Clacu06g0147 Clacu-Chr6:1658296 Clacu06g0736 Clacu-Chr6:8626032 9.40E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47828 PF03552 Cellulose_synt 1.10E-130 CL0110 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0147 K10999 - csv:101208794 1450.65