Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g0147 | ATGATGGCTTGCGTAGAGCCGATAGCGCCATTGTTGTGCTACTCGACCATATGGCGACTTTCTTGTGCCCACCATGGAACGCTGACGGACAAGCGCAGACTCTTACGAATTTGTTTCACTGATCTCTCTCTTGCTTCTTGGGTTCTCGTGGGTCGAATCGATCTTCAAGGTTTTTCCCTCCTCGTTTCTGTTTACTTGATTGGCAGGGATTTGTTTGCTTTGTGTATTCATGTTTCCTACGGAATAGCAGGCACTTTTGTCTTTTGGATCGAAATAAATATGGCACCGCCTCGGGTTTCAAAAGCTTTTCGTGCAATGAGGGATATTGGGATCAGTGAAGATAAGACAAAACCAGTCTTAAAGAAACTCCTGAAATTGTATGATAAGAACTGGGAACTTATTGAAGAAGAGAACTATAGAGTTCTTGCAGATGCAATATTTGATGAGGAAGATAGTAAGGTTGTAGAAGAGAAGAAATGTCAGAATTCTCAAGTGGAAGATTTTGGGGAAGATGTTCAGGGGCCTGATGAGCCAGAACGCCCTCTGAAAAGGTTGCGCTTAAGAGGCCAAGAAACCCAGGTTGATGGGATGGCTTTAAAAAAGCCCAAATTGGAAGAGGATGCGTTTCCTGAAACCAGTTCCCAACAGCAGATGCAGTTAAGTGGGCCTAAGAGATCTGAAACTGGTCCAAGTTCTTCTCGTCGTGTAGACAAAGGGAAGGAACCTGTATCACCCCGTGTGGTTACGAGAGTGAAAAAATCTAGCCTAGAGAAATCATCTGCTTCTGTTCGTATTAAGGAACCAGGGGCTGAGTCAGGTGTCAAAAATTCCATAGTGAGGGCATCTGGGTCTCTTGCGTTGCTCAAACCTAAAGATGAACCAATTACTGACGATGCATTTACAAATGAGTTGCCTATTGCTGCGATTCATCCAGATTCTTCAAGAAAAGAAGATCATTCCATTGCAAATGATTCAGTTAGGAAGGCAGATGGCCAAGTTGCTCAAGTATCATATCCTTCAGACGGAAGTAACAAAGGTGATGGTACGGAAACATCATCATGTAAGAGGATTACAGGCAGTGAGCTTGCAACTGTTATGGAAGAATTACATCCTAACTTAGAGATTGCATCGTCGCCACTGGGAGAGGTAAAAATTTCTTTGTGCTGCGACTCCACTTTTGGACGACCAGATTTCCGTATGCCTAGTCGTGATGCAGTTATAAAATATATGGAGGAAAAATGTCTGCAGTCATATAAAATCATTGACCCCACGTTTTCTGTTATGAAACTGTTGAGTGATATGTGTGAGTGCTTCTTGGAATTGGGAACTGATTCTCCTGATGAACAACAGGAAGGTTCAATTAGTAGAGTTCCACTTCTAGATGTAATGGAGAGTTCAGATCCAATGGATACTCCAGGGACTGTTGCCAATGAAGGAAATTTGGATCTACGCACTTCTGTGAATGAACCAGTCAATACTATCTCTGATGGAGAACTTGCACCACAAGTCCCTAGTATGGTAGAGTCTTCAAGTGTTTCCAATCACCAGACTATCCATGAAACCTCTAAAAGCAGCAAAGAAATACCAAATGGTCATTCTGAAGATGAAGCGAGGAAGGAGTTTGATAATCTTGAGCCTGCAAATCCGCAGAATTTGATGGTTGTTTCACAGAGTCAACAAGCTACTGATGAATTAAGCTTCTCTCATGATGTGGTTGATATAGCCAAGGGAGAAGAAAGGGTTCAAATTTCTTGGGTGAATGAAATTAATAAAGAGCATCCACCATTCTTTCACTATATACCTCGCAGTCTAATATTCCAAAATGCTTTTGTAAATTTCTCTCTCTCTCTGATTGGTAATGATAATTGTTGCCAGTCTTGTTTTGGAAATTGCCTTACATCTTCTGTCCCTTGTGCTTGTGCACGGGAAACTGGGGATAAGTATGCATACACACCAGAAGGTCTTGTTAAGGAAGATTTTTTGGATGAGTGGACCTCTCTTGCTCGTGAATCTCAAGGAAACCACCAGTTCTATTGCAAAGAGTGTCCTCTTGAAAGATCAAAGAATGATAATTGTTTAGAACCCTGCAAAGGCCACTTAGAGAGGAAGCTTATAAAAGAATGTTGGAGTAAATGTGGTTGCAATAAGCATTGTGGCAATAGAGTGGTGCAGCGAGGAGTAAAGTGCAAGTTGCAGGTATTTTTTACTTCCGAAGGAAAAGGATGGGGCCTTCGAACCCTTGAAGACCTACCTAAAGGCTCTTTTGTTTGTGAATATGCCGGAGAAATATTAACCATTTCAGAAATGTATCATAGAAAGGTGCAAAGCACCAAAAATGGGGAGCATACCGACCCAGTATTATTAGATGGCTTTTGGAATAAAGAAGGGCCTTTGAAGGAGGAAAAAGCTCTCTGCTTGGATGCAACAAACTTTGGGAACGTTGCCAGATTTATCAATCACAGATGCTTTGATGCAAACTTGGTTGACATAGCAGTTGAGATAGAGACTCCGGATCATCATAATTATCATCTTGCCTTATTCACTACAAGAAAAATAGATGCCATGGAAGAGCTAACTTGGGATTATGGAATCGATTTTGATGATCTTGATCATCATGTTAAGCCATTTCTCTGTCAATGTGGCAGCAAGTTCTGCAGAAATATGAAACGATCTTCTAATGATTGTGCTTTATCTGTGCATTTTATGGTGATTGGTAAATGTAAACTGCTGGAAGCCCCAATAATCAATATCGTTTTTGAAGACGATGGTTCGGTTTGGGTAGTAAAGCTGAGGATCGATCACAGATTCACATTATGCTTTTTTGCTCGGCCGCGGGAGGGAAGCCAAAGTCCATCAACAATGTCGAAGCGAGGAAGGGGAGGATCCGCAGGGAACAAGTTTCGGATGTCACTGGGTCTTCCGGTGGCTGCTACTGTCAACTGTGCAGACAATACGGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGATCAAAGGTCGCCTCAATAGGTTGCCATCCGCATGTGTCGGTGATATGGTTATGGCCACCGTTAAGAAAGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCGTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAATGCTGGTGTTATCGTCAATCCCAAGGGCGAGATGAAAGGTTCGGCTATTACTGGCCCCATCGGAAAGGAATGCGCTGATCTCTGGCCAAGGATTGCAAGTGCTGCGAATGCCATCGTCATTGGTATCGGCATCGGCATCGACATTGGTTTTGGTCTTGGCCTGTCTCTAAAGACATGGCTGGCTTGGTCACTGGTTCCCAACACTATCCCCACGAGTCTTCGTGGACCTCCACTATCGTCGAAAATATGTCGAATTTGCAGTGATGAAATAGGACTAAAACAAGATGGAAAAGTATTTGTGGCATGTCTTGTGTGCAATTTCCCTGTTTGTCGACCTTGTTATGAGTATGAAAGGAGCGAAGGCAATAGGTGTTGTCCCCAATGCAACACTCGCTATAAGCGTCACAAAGGCTCACCCAGAGTGATCGGCGACGAGGAAGAAGGTGACGATGCCGATGATTTTGACGATGAGTTCCCCATGAAACACCACAACAATGACGAATTTGAAACAAAGCAGCCTAATCATTCGGAAAACGATAACTACAATGAGCAGAATTGGCATAAAAATGTTCAGAATTCGTTCTCAGTTGCTGGAAGTGTGAATGGGAAGGATATGGAAGGGGAAAAAGAGGGTTATGGAAGTGTAGAATGGAAGGAGAGAATTGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAAGAAGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCAGAAGCCCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCAAGCAAAATCAGTCCATATCGCATCGTCATTGTCCTCCGCCTCATAATTCTTGCATTCTTCTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCCTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAAATTTGGTTCGGCTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTAGATCGCCTCTCCATGCGCTTCGAGCGCGACGGCGAGCCCAACCGCCTCTCACCGATCGACTTCTTCGTCAGCACGGTGGACCCTCTGAAAGAGCCGCCGATCATAACCGCCAACACCGTCCTTTCCATCCTCTCGGTCGACTATCCGGTGGAGAAGGTCAGCTGCTACGTATCGGACGATGGAGCGTCGATGCTGCTGTTCGATACGCTGGCGGAGACTGCGGAGTTTGCTCGGAGATGGGTGCCGTTTTGCAAGAAGTTCAGTATCGAACCTAGGGCTCCGGAGTTCTATTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGGCTAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGACGTGGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCGTTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGAAATCAAAATCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCGCCGGGACCAGTTTTTGA | 4980 | 44.72 | MMACVEPIAPLLCYSTIWRLSCAHHGTLTDKRRLLRICFTDLSLASWVLVGRIDLQGFSLLVSVYLIGRDLFALCIHVSYGIAGTFVFWIEINMAPPRVSKAFRAMRDIGISEDKTKPVLKKLLKLYDKNWELIEEENYRVLADAIFDEEDSKVVEEKKCQNSQVEDFGEDVQGPDEPERPLKRLRLRGQETQVDGMALKKPKLEEDAFPETSSQQQMQLSGPKRSETGPSSSRRVDKGKEPVSPRVVTRVKKSSLEKSSASVRIKEPGAESGVKNSIVRASGSLALLKPKDEPITDDAFTNELPIAAIHPDSSRKEDHSIANDSVRKADGQVAQVSYPSDGSNKGDGTETSSCKRITGSELATVMEELHPNLEIASSPLGEVKISLCCDSTFGRPDFRMPSRDAVIKYMEEKCLQSYKIIDPTFSVMKLLSDMCECFLELGTDSPDEQQEGSISRVPLLDVMESSDPMDTPGTVANEGNLDLRTSVNEPVNTISDGELAPQVPSMVESSSVSNHQTIHETSKSSKEIPNGHSEDEARKEFDNLEPANPQNLMVVSQSQQATDELSFSHDVVDIAKGEERVQISWVNEINKEHPPFFHYIPRSLIFQNAFVNFSLSLIGNDNCCQSCFGNCLTSSVPCACARETGDKYAYTPEGLVKEDFLDEWTSLARESQGNHQFYCKECPLERSKNDNCLEPCKGHLERKLIKECWSKCGCNKHCGNRVVQRGVKCKLQVFFTSEGKGWGLRTLEDLPKGSFVCEYAGEILTISEMYHRKVQSTKNGEHTDPVLLDGFWNKEGPLKEEKALCLDATNFGNVARFINHRCFDANLVDIAVEIETPDHHNYHLALFTTRKIDAMEELTWDYGIDFDDLDHHVKPFLCQCGSKFCRNMKRSSNDCALSVHFMVIGKCKLLEAPIINIVFEDDGSVWVVKLRIDHRFTLCFFARPREGSQSPSTMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIVIGIGIGIDIGFGLGLSLKTWLAWSLVPNTIPTSLRGPPLSSKICRICSDEIGLKQDGKVFVACLVCNFPVCRPCYEYERSEGNRCCPQCNTRYKRHKGSPRVIGDEEEGDDADDFDDEFPMKHHNNDEFETKQPNHSENDNYNEQNWHKNVQNSFSVAGSVNGKDMEGEKEGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLIILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLSPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSQKMDYLKDKVLASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAEIKIQEERRKRFAWRPVQEEENDGEELCKESAGTSF | 1659 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1658296 | 1683228 | + | ClG42_06g0014700.10 | Clacu06g0147 | 250795 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 158 | 274 | - | - | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 1640 | 1659 | - | - | |
Clacu06g0147 | 1659 | SMART | Ribosomal_L14_2 | 972 | 1093 | IPR000218 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 504 | 536 | - | - | |
Clacu06g0147 | 1659 | FunFam | 60S ribosomal protein L23 | 954 | 1093 | - | - | |
Clacu06g0147 | 1659 | ProSiteProfiles | SET domain profile. | 729 | 863 | IPR001214 | GO:0005515(InterPro) | |
Clacu06g0147 | 1659 | SMART | preset_2 | 571 | 713 | IPR007728 | GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro) | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 336 | 354 | - | - | |
Clacu06g0147 | 1659 | ProSitePatterns | Ribosomal protein L14 signature. | 1032 | 1058 | IPR019972 | - | |
Clacu06g0147 | 1659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1126 | 1210 | IPR013083 | - | |
Clacu06g0147 | 1659 | FunFam | SET-domain containing protein lysine methyltransferase family protein | 574 | 888 | - | - | |
Clacu06g0147 | 1659 | Pfam | Ribosomal protein L14p/L23e | 975 | 1093 | IPR000218 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 174 | 190 | - | - | |
Clacu06g0147 | 1659 | Gene3D | Ribosomal protein L14 | 954 | 1093 | IPR036853 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu06g0147 | 1659 | Gene3D | SET domain | 574 | 888 | IPR046341 | - | |
Clacu06g0147 | 1659 | SUPERFAMILY | RING/U-box | 1132 | 1208 | - | - | |
Clacu06g0147 | 1659 | CDD | SET_SETDB-like | 595 | 863 | - | - | |
Clacu06g0147 | 1659 | Pfam | Zinc-binding RING-finger | 1132 | 1203 | IPR027934 | - | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 312 | 354 | - | - | |
Clacu06g0147 | 1659 | SUPERFAMILY | Ribosomal protein L14 | 964 | 1093 | IPR036853 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu06g0147 | 1659 | PANTHER | INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED | 97 | 893 | - | - | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 209 | 229 | - | - | |
Clacu06g0147 | 1659 | SMART | set_7 | 729 | 869 | IPR001214 | GO:0005515(InterPro) | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 230 | 260 | - | - | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 504 | 519 | - | - | |
Clacu06g0147 | 1659 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 70 | 920 | IPR025776 | - | |
Clacu06g0147 | 1659 | Gene3D | - | 90 | 152 | IPR043017 | - | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 1190 | 1237 | - | - | |
Clacu06g0147 | 1659 | Pfam | Cellulose synthase | 1406 | 1623 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Clacu06g0147 | 1659 | CDD | mRING-HC-C4C4_CesA | 1135 | 1185 | - | - | |
Clacu06g0147 | 1659 | Coils | Coil | 1504 | 1524 | - | - | |
Clacu06g0147 | 1659 | ProSiteProfiles | Pre-SET domain profile. | 630 | 726 | IPR007728 | GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro) | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 520 | 536 | - | - | |
Clacu06g0147 | 1659 | Hamap | Large ribosomal subunit protein uL14 [rplN]. | 972 | 1093 | IPR000218 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Clacu06g0147 | 1659 | Pfam | Ubiquitin-binding WIYLD domain | 98 | 151 | IPR018848 | - | |
Clacu06g0147 | 1659 | SUPERFAMILY | SET domain | 581 | 886 | IPR046341 | - | |
Clacu06g0147 | 1659 | MobiDBLite | consensus disorder prediction | 1209 | 1230 | - | - | |
Clacu06g0147 | 1659 | Pfam | SET domain | 741 | 863 | IPR001214 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g0147 | Clacu-Chr6:1658296 | Clacu11g1317 | Clacu-Chr11:22466230 | 1.50E-182 | dispersed | |
Clacu06g0147 | Clacu-Chr6:1658296 | Clacu06g0736 | Clacu-Chr6:8626032 | 9.40E-76 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47828 | PF03552 | Cellulose_synt | 1.10E-130 | CL0110 | Clacu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g0147 | K10999 | - | csv:101208794 | 1450.65 |