Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g0160 | ATGGGGCGTTCCCTAGTTGCTGGCCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCTAATGACTCTTCTTTGGGGGGTTTAGTCTGGTCTTCTGCAAAAGAAGAGGGCGATCTCCTTATTGAGCACAGGCCCCAGGAAGATTCCGCCGCCGCCACACCTGTCGTTCACGATGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTGAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAGTGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTACTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATTTCGATCCTGATATTAGGAAAGTTGCAGCGTGGATTCTTGGAAAAGCAAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCATCATTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACCATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTTGATCTCATCCATTCCACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAACAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTGGATGTTGCTTTGGAGAGGATGAGGGTGAAGCTGGAGGTATTAAAGGAAGGGGAAGATCACCGAGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGTTACTTTTCCTTGAAAAGCTGGGAAAGAGAATGCAGCGGCCGGTAGCAGCTCTCTCTCACGAACATCCATCCCGGCGGCATCTTTCTCTCTCGAGCACCCATCCCACCGTATTTTCATTTATTACGATGGCTGATGCTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATCTCTCTCATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTAAATCGTCAATCTGTTTTGGGTGCTATCACGTCTGCTCAGCAGAGACTCAAGCTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTTTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACAATTGATTTTGAGCCTTTCAGGCCTATAAATGCATCTCTTTATCTCTGCGACAACAAGTTCCACACGGAAGCCCTGAATGAACTGTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTTCACAAATTTAGTGTCGACCTTCCTAAGAAACATGGAAGAGGAGGTCAGTCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCCAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACAGAGCTCAGTCAATCCGACATGTTTGATCCTCGTCTTCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAAGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACAGGGAAGTATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAAATACTTATTGTTTGGGAAAATTTAGATATCAATAGGTATGTATTAAAGAATGCTGCCACTGGTGAGATTATTATAAAGCATTTGAACAAGGAACAGGAAGCCAATCAGAGCAACTTTCGTGACACCGCCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGATGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTTGGTTGCACCCTGGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG | 2571 | 43.1 | MGRSLVAGLCLWFSLTLVIADANDSSLGGLVWSSAKEEGDLLIEHRPQEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLLLVEPIDNANDLDKLGGLAVLIHELNHFDPDIRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERPFFGDRLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRTTKAQVLREFCGLDVALERMRVKLEVLKEGEDHRDYAMDVEDLRSQVELLFLEKLGKRMQRPVAALSHEHPSRRHLSLSSTHPTVFSFITMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDTATSAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGDSE | 856 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1825844 | 1833519 | - | ClG42_06g0016000.10 | Clacu06g0160 | 250808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g0160 | 856 | FunFam | Peptide chain release factor subunit 1 | 699 | 856 | - | - | |
Clacu06g0160 | 856 | SMART | eRF1_1_2 | 424 | 560 | IPR005140 | - | |
Clacu06g0160 | 856 | Gene3D | - | 104 | 390 | IPR011989 | - | |
Clacu06g0160 | 856 | PANTHER | PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 | 422 | 847 | IPR004403 | GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER) | |
Clacu06g0160 | 856 | SUPERFAMILY | ARM repeat | 110 | 341 | IPR016024 | - | |
Clacu06g0160 | 856 | Gene3D | - | 699 | 856 | IPR029064 | - | |
Clacu06g0160 | 856 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 556 | 697 | - | - | |
Clacu06g0160 | 856 | Gene3D | eRF1 domain 1 | 416 | 555 | IPR024049 | - | |
Clacu06g0160 | 856 | NCBIfam | peptide chain release factor aRF-1 | 432 | 837 | IPR004403 | GO:0003747(InterPro)|GO:0006415(InterPro) | |
Clacu06g0160 | 856 | SUPERFAMILY | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | 426 | 560 | IPR024049 | - | |
Clacu06g0160 | 856 | SUPERFAMILY | Translational machinery components | 562 | 696 | - | - | |
Clacu06g0160 | 856 | Pfam | eRF1 domain 1 | 437 | 559 | IPR005140 | - | |
Clacu06g0160 | 856 | SUPERFAMILY | L30e-like | 698 | 840 | IPR029064 | - | |
Clacu06g0160 | 856 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 422 | 555 | - | - | |
Clacu06g0160 | 856 | Pfam | eRF1 domain 3 | 701 | 838 | IPR005142 | - | |
Clacu06g0160 | 856 | Coils | Coil | 129 | 149 | - | - | |
Clacu06g0160 | 856 | Gene3D | eRF1 domain 2 | 556 | 697 | IPR042226 | - | |
Clacu06g0160 | 856 | Pfam | Nucleotide exchange factor Fes1 | 71 | 162 | IPR013918 | - | |
Clacu06g0160 | 856 | Pfam | eRF1 domain 2 | 564 | 697 | IPR005141 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g0160 | K03265 | - | csv:101218139 | 842.802 |