Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0166 ATGGTGGATCGGCGGCATGGAAAGCGAGCACTTCCTTGGGAAGCACCGGAGGAGAAAGAAAGAGATCAAAATAATGAATTCCCTTCTTCTTGGTCCCAATCCAACTTCAATTATTCCCCCAATTTCAATCCACAAACACTAACTCAACTCCCTCAATCCGCCCCTCTTCAAAATCAAGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGCGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGAACTTTCGATACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTGAGATTTAAAGGAACCAAAGCCAAGCTTAATTTCCCTGAACGAGTTCAAGCCAATCCTTCTGACTTTGGCTTTCTTCCCTCCGCCGCCTCCACCGCTGCTTCTTCTGCTGCTCCACCTCCCCAAGCCGCCGTGGCTTCATTTTCATCTCCTTCTCTTTCTCTTCCGCCGCCGTTGTCGGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAAACCCATTACCCTTTTTCTTCTTCTTCTTCTACACAACCACACCAACAAGATCAGGATCACTACGGCAAAGATTTCGGCACCGGTGGCTCAACCAATTAG 720 48.33 MVDRRHGKRALPWEAPEEKERDQNNEFPSSWSQSNFNYSPNFNPQTLTQLPQSAPLQNQETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPSDFGFLPSAASTAASSAAPPPQAAVASFSSPSLSLPPPLSEEEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQQTHYPFSSSSSTQPHQQDQDHYGKDFGTGGSTN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1874034 1878037 - ClG42_06g0016600.10 Clacu06g0166 250814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0166 239 MobiDBLite consensus disorder prediction 208 239 - -
Clacu06g0166 239 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0166 239 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Clacu06g0166 239 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0166 239 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0166 239 MobiDBLite consensus disorder prediction 144 172 - -
Clacu06g0166 239 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677(InterPro)
Clacu06g0166 239 MobiDBLite consensus disorder prediction 208 223 - -
Clacu06g0166 239 MobiDBLite consensus disorder prediction 26 60 - -
Clacu06g0166 239 MobiDBLite consensus disorder prediction 1 74 - -
Clacu06g0166 239 SMART rav1_2 68 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0166 239 Gene3D AP2/ERF domain 67 127 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0166 239 PANTHER DNA-BINDING DOMAIN 33 212 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu06g0166 239 Pfam AP2 domain 68 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0166 239 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0166 239 MobiDBLite consensus disorder prediction 1 25 - -
Clacu06g0166 239 MobiDBLite consensus disorder prediction 144 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0166 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1646 Clacu-Chr1:28579207 Clacu06g0166 Clacu-Chr6:1874034 1.10E-26 dispersed
Clacu06g0166 Clacu-Chr6:1874034 Clacu08g0858 Clacu-Chr8:18626154 8.90E-28 dispersed
Clacu06g1942 Clacu-Chr6:29626365 Clacu06g0166 Clacu-Chr6:1874034 4.00E-30 transposed
Clacu05g0487 Clacu-Chr5:4045675 Clacu06g0166 Clacu-Chr6:1874034 2.20E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47829 PF00847 AP2 8.80E-14 CL0081 Clacu TF