Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0193 ATGGCCGACGGCAAGTTCGATCTCCCTGACGATCTTCTCTCCTCCCGCCCTTCCGATCACTCCTGGACACCCAAAGTGGAAGCTTCTGGAGGGAATGACGAGGAGAAGGTGCTCTCGGCCTTCCTTGACGAGTCAAAAGACCCAGTGGCTTCAGAGAACAGCATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAACTAAGATGGAAGTGCGTGCTCCAACACCAGTGTCCCTTGCTAACTCAATTGATCTCAATCAGAAAGAGGGTTGGCGCCCTGATGGGTCTGAGGACAAGAAAGATTGGAGGAAGAGTACTTCTGAAAATGAAAGTGGCCGCCGTTGGCGAGAGGAAGAGCGAGAAACTGGCTTACTTGGTGGTCGCCGCAGGAAAACTGAGCGCCGCATTGATAACATGTCAACTAAAGAGGCAATGGAGAGTAGAGTTCTGCCTAATTCAGATAGATGGCATGATGGTCGCACTTCTGGGCATGATGGTCGCACTTCTGGTCATGACGGTCGTACTTCTGGACATGATGGCCGTACTTCTGGGCATGATAGTCGTACTTCTAGTCATGATGCACGACGTGACAACAAATGGACGTTGAGATGGGGACCAGATGACAAAGAAAAGGAATCACGGATGGACAAGCGTTCAGATGCTGATAAGGAAGATGTTCGCAATGACAGTCAATCAGTGAGTGGCAATCGCCCTACTTCTGAGCGTGATTCTGAATCGCGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGCCATTCTGTTGGCTCAACTTCCTCTCGCGCTGCACCTGGTTTTTCACTTGAGAGAGGGCGGGGAGATGGGGGGTCTAATTTAGGATTTACAATTGGAAGAGGAAGGGCAAATACTATTGGGAGATCGTCTACTGGTCTCATTGGAGTTCCACACTTGGATAAGATTGAAAATGTTCCTGGGAAACCAAGATACTCATCTCATGCTTTTTGTTACCCCAGGGGTAAGCTTCTTGACATATATAGGAGGCAGAAATCTAATCCATCATTCTCAGCTCTGCCTGATGATATGGAAGAATTGCAGCCTGTGACTCAACCTTGTGTTGTAGAACCATTAGCTTTTGTTTCTCCGGATGCTGAAGAGGAGACTACCCTTAGTGACATATGGAAGGGGAAAATCACCAGTAGCGGGGTTGTTTACAATTCACATAAGAAGGGGAAGCTAGCTGAATGTGTTTTAGGAGATGTAGACTCCATAGATGGATATCAGACTGGGCTGGATTCAACTTTAGAGTCTGAGAATATAGCAGCAACTCCGGTTGAAGATATTGCTAATGTGACTCATGAAGTTACTAATGATGAAGCATGCCAAGATGCTAGTGACAGGAGCATTTGGAGTCATCCTTCAATGAGAGATGTCCTAGATGGAAAATACGTCAGCCATAATAAGGAAGATGATAAAAGGTCTAGTGCCATTTCTACGTCAAACTCTGGTGGATTGGCCCACACAGTTTCTACAGTAGCCTCCCAACGTGGGATGGAGATTGGTGGTGGACACCCTGGTACTCAGCTAAATGTTGGTGTCAATGGGCGAGCAGATTCTGATCATAAAAAGCCTCATAACTTTGATGAAAATGAGTTTGCCAATTCGTTTGATGCCAGATCCAAGCTTTCTGATGATCCTAGCTCTATTTTCTTTATTCCCTTCTCTGAGCAAAATCCAAATAAAAGTTCTGATGTGAAATCTGAGGAGATGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATACAGGGGCCTTTTATTGGGGCTGACATCATCTTGTGGTATGAACAAGGTTTCTTTGGGTTGGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAGTCCCCATTTTGTGAGTTGGGGGAGGTTATGCCACATTTGAAAGTTAGAGAGGGAAGTGTTGATTGTGCTGATACGAAATCTCTTTCAGGCCAGTCTGGTGCCTCAGGAGGAATAATGGAGACCAATTTACCTTCTAAGCATCCAGCTCTTGATGCGAATGATGCATCCACAACAAATGAGGTTCATCGGTCACTTGCTGAGTTACATAGCCTCTCCAATCAACACATTTCATCTGGAATGTCTGAGACTGAAGCACCATTTCAATTGCATTCCAAGGGTCAAAGCTTTCATGATGTTGTTGCTCAGGATGAAGAAATTGTGTTTTCTGGAAGACCTGGAAACGATGGCTACCAATTTCCAAACTCTTCTGGGGTACTGCCTATGGTGAATTCTATCAGCCAACCTTCTCTTTTGCATGAGTTAACTGACCGCAGTGTGCCTGTTCAGAATGAAAATAAGTTGCACCCTTTTGGATTGCTGTGGTCTGAGCTGGAAGGTACAAATATGAAACCAATTGAAGTTACAAATTCGAAACATACCAAGTCAGCTAACATGCCTTCAAGCATGGTAAGAACCGCACCATTAGTTGGGAAGCCGGAAGCATCTCTTAATGCAGAGACTTGGCTTGATGTTTACAGAAGAAGTATGCATTCTGACCAGAGCATATACCAGGATGCGAGTGTTGCTCATTCGTTGCCACATATAGAACAGGAATCTAATAGGTTTGATTTGGCAGATCAACTCATGTCACATCAATATCATCAGGCACTTCAACAGCGGAATTTGTTGTCTCACTCTAATGAAGCTACTTTAGATCATCATATGCAACAGCAGAATCTTATTCACCAGCAGCAGCTGTTGGCTAATAGAAGTACACCCGATCTCGATCATTTCTTGAACTTGCAGATGCAACAGCAACAGCAACGTCAGCTGCAGTTACAGCATCAATTACAACAGCAGCAGTTGCAGCAGCAGCAAAAGCTTTTGCAGGAACAACATCAGTCTCAAGTCCAGCAGGTACTGCTTGAACAGTTGTTGCGTCGACAAATGCATGATTCAGGCCTTGGGCAGACACATATTGATCCAATTAGAGCCAATAATGCTCTTGATCAGGTGATGATGGAGCAGCGTCTTTTACATGAGCTACAGCAACAATCTCATCATCAACAAAGATCTGTTGATCCATCTTTTGAGCAGCTTTTCAAAGCGAAGTTTGGTCACTTGCCACCACACCAAGAACAAAGAGATTTGTCTGAATTAATATCTCGGGCTCAGCATGGACAGATACAATCATTGGATCATCAACTTCTCCAGCAGGAGATGCTACAGTCGAGACAGTTGTCTATGGCATTAAGGCAGAGGGCCAATATGGAGGACAAGAGACATGTTGGTGGTCCTATCTGGCCAGAGGATGAGGCTGATCAGCAGTTTTTCAGAGGACATGCTGGCACACAACGCTTACCGACTTCAGGGTTTGAATTATACCAGCATCAACAGAGGCAAGCTCATGCAGACCAGCTGAATCATCTTGAGCGCAATCTTTCCTTTCAAGATCGGTTTAGACTAGGTCTTTATGAGCCTGCTTCACTTCCACTCGAGAGATCAATATCCTATCCTGATGTTGCTCAGGGGATGAATCTGGATGTTGTTAATGCTATGGCTCGTGCTCGGGCTTTAGAATTGCAAGAATCTAGTGCACATAATCCACCTGGTGGTCAACTGGGGCAATATGCACCCGGTACCATTCCACAGAATCATCATCACTCTCTAGTCGGTAACCAGTTTCACGTTTCACATTTTGATGGAACTGAAGGCAGCTGGTCTGAGAAAAATGAGCGACTTGGAAATGATTGGATGGAGTCTCGCATTCAACAACTGCATATAAATGCTGAGCAACAGAAAAGGGAGTTGGAAGCTAAAATGATTTCCGAGGATCCAACTTTATGGATGTCAGATGGGCTGAATGATGAGAAGTCAAAGCAGTTATTAATGGAACTCCTCAATCAGAAATCTGTTCATCAACCTACAGAATCCTTGGATGTAGGAAGTGGAGCATCTTTCAATAGAGCATCATGTGGCCTCTATTCTGGATCAGGCTCTCTTGAACAGTCGTTCATTCTTCATTCAGGCAAGGAAAGAGGTATGAACAACACATTGCCAGTGGGGTCTTATGGTCCTAATTCTTATGAACCACTGCAAGATGAGCATCCTGGCAACTTGACCAGCAATGAGAAGGTCCCATACAGGTCGGATTCTGTCTCTGTTGTCAAGGGAGCATCAATTTTGGCTGGTCTTAAAGCCAATGGTGCGGTTAACAGCTCTAGTTCCGGCATGGCTGGCAACCTTTCTATGAATAGAGATGTCTTAGAGGTGGAGGGCAGGGCGCGAGGATTGAAAGGTGAGGGTTTGATGAAAACTCAAGCCTTTCAAATTCAAGAAAGCATGCTTGATCAAGTGGCATCTGCTGATCGTGGGGAATTTTCAATGGATACTCATACCCTTAGTCGGCATTCGTCTCTTTGTTCTGCTGGCTTTCACAATGAAAAGATTGCCAATACGTTTCCTGAAGAGGTTGCTAAAGACCAGGTGACTATTCACAATAAAGATAACACTTTATTGAAACGCCCTCCCGTTTCACGCACTTCGGCATCCCAGGATGGTTTGTCTGTCCTGATTCCAGATCCGGTTGTCAGAGGGAAGAATTCAGATGGTGGAAGACCGGACCCGACTGGTATCTTGGTGAACCAAGAAAATATGGCAGCCATGAAGAAAGAGATGCGTTTCCGTCGCTCTTCTTCTTGTAGTGACAGCGACGTGTCGGAGACTTCTTTTATTGATATGCTGAAGAAGACAGCTCCACAAGAAGCCCATTTGACGACGGCAGGAGTTTCGGAGCCATCTGCTGATGGAGGAATGCAGGGAGGGAAAGGTGGGAAGAAGAAAGGGAAGAAGGGGAGACAGATAGATCCCGCTCTACTCGGTTTCAAAGTCACCAGCAATCGAATTATGATGGGTGAAATTCAACGCTTAGAGGATTAG 4917 45.41 MADGKFDLPDDLLSSRPSDHSWTPKVEASGGNDEEKVLSAFLDESKDPVASENSIPLSPQWLYAKPSETKMEVRAPTPVSLANSIDLNQKEGWRPDGSEDKKDWRKSTSENESGRRWREEERETGLLGGRRRKTERRIDNMSTKEAMESRVLPNSDRWHDGRTSGHDGRTSGHDGRTSGHDGRTSGHDSRTSSHDARRDNKWTLRWGPDDKEKESRMDKRSDADKEDVRNDSQSVSGNRPTSERDSESRDKWRPRHRMESHSVGSTSSRAAPGFSLERGRGDGGSNLGFTIGRGRANTIGRSSTGLIGVPHLDKIENVPGKPRYSSHAFCYPRGKLLDIYRRQKSNPSFSALPDDMEELQPVTQPCVVEPLAFVSPDAEEETTLSDIWKGKITSSGVVYNSHKKGKLAECVLGDVDSIDGYQTGLDSTLESENIAATPVEDIANVTHEVTNDEACQDASDRSIWSHPSMRDVLDGKYVSHNKEDDKRSSAISTSNSGGLAHTVSTVASQRGMEIGGGHPGTQLNVGVNGRADSDHKKPHNFDENEFANSFDARSKLSDDPSSIFFIPFSEQNPNKSSDVKSEEMSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPESPFCELGEVMPHLKVREGSVDCADTKSLSGQSGASGGIMETNLPSKHPALDANDASTTNEVHRSLAELHSLSNQHISSGMSETEAPFQLHSKGQSFHDVVAQDEEIVFSGRPGNDGYQFPNSSGVLPMVNSISQPSLLHELTDRSVPVQNENKLHPFGLLWSELEGTNMKPIEVTNSKHTKSANMPSSMVRTAPLVGKPEASLNAETWLDVYRRSMHSDQSIYQDASVAHSLPHIEQESNRFDLADQLMSHQYHQALQQRNLLSHSNEATLDHHMQQQNLIHQQQLLANRSTPDLDHFLNLQMQQQQQRQLQLQHQLQQQQLQQQQKLLQEQHQSQVQQVLLEQLLRRQMHDSGLGQTHIDPIRANNALDQVMMEQRLLHELQQQSHHQQRSVDPSFEQLFKAKFGHLPPHQEQRDLSELISRAQHGQIQSLDHQLLQQEMLQSRQLSMALRQRANMEDKRHVGGPIWPEDEADQQFFRGHAGTQRLPTSGFELYQHQQRQAHADQLNHLERNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESSAHNPPGGQLGQYAPGTIPQNHHHSLVGNQFHVSHFDGTEGSWSEKNERLGNDWMESRIQQLHINAEQQKRELEAKMISEDPTLWMSDGLNDEKSKQLLMELLNQKSVHQPTESLDVGSGASFNRASCGLYSGSGSLEQSFILHSGKERGMNNTLPVGSYGPNSYEPLQDEHPGNLTSNEKVPYRSDSVSVVKGASILAGLKANGAVNSSSSGMAGNLSMNRDVLEVEGRARGLKGEGLMKTQAFQIQESMLDQVASADRGEFSMDTHTLSRHSSLCSAGFHNEKIANTFPEEVAKDQVTIHNKDNTLLKRPPVSRTSASQDGLSVLIPDPVVRGKNSDGGRPDPTGILVNQENMAAMKKEMRFRRSSSCSDSDVSETSFIDMLKKTAPQEAHLTTAGVSEPSADGGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLED 1638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2181288 2189953 + ClG42_06g0019300.10 Clacu06g0193 250841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0193 1638 Coils Coil 991 1011 - -
Clacu06g0193 1638 SUPERFAMILY GYF domain 579 639 IPR035445 -
Clacu06g0193 1638 Gene3D - 570 653 IPR035445 -
Clacu06g0193 1638 ProSiteProfiles GYF domain profile. 583 633 IPR003169 GO:0005515(InterPro)
Clacu06g0193 1638 MobiDBLite consensus disorder prediction 92 232 - -
Clacu06g0193 1638 MobiDBLite consensus disorder prediction 1519 1538 - -
Clacu06g0193 1638 MobiDBLite consensus disorder prediction 242 262 - -
Clacu06g0193 1638 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1638 - -
Clacu06g0193 1638 MobiDBLite consensus disorder prediction 1 34 - -
Clacu06g0193 1638 Coils Coil 1242 1266 - -
Clacu06g0193 1638 MobiDBLite consensus disorder prediction 70 286 - -
Clacu06g0193 1638 CDD GYF 583 640 IPR003169 GO:0005515(InterPro)
Clacu06g0193 1638 MobiDBLite consensus disorder prediction 1582 1615 - -
Clacu06g0193 1638 SMART gyf_5 584 638 IPR003169 GO:0005515(InterPro)
Clacu06g0193 1638 Pfam GYF domain 587 624 IPR003169 GO:0005515(InterPro)
Clacu06g0193 1638 Coils Coil 927 949 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0193 K18730 - - csv:101204211 2769.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1304 . . . . Bpe13g00818 . . . . . . . . . . . . . . . . . . . Cla06g00177 Cam06g0034 Cec06g0196 Cco06g0191 Clacu06g0193 Cmu06g0187 Cre06g0959 . . . . . . . . Blo02g00198 . . . Bpe14g00803 . . . . . . . . . . . . Bhi12g02418 . . . Hepe03g1143 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44