Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g0211 | ATGTATTGGAAACTCAGAGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGGAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACCGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA | 987 | 46.61 | MYWKLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSNVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2363718 | 2365620 | + | ClG42_06g0021100.10 | Clacu06g0211 | 250859 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g0211 | 328 | FunFam | Squamosa promoter-binding-like protein 14 | 42 | 111 | - | - | |
| Clacu06g0211 | 328 | Gene3D | - | 42 | 111 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Clacu06g0211 | 328 | Pfam | SBP domain | 50 | 123 | IPR004333 | GO:0003677(InterPro) | |
| Clacu06g0211 | 328 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 27 | 297 | IPR044817 | GO:0003677(InterPro) | |
| Clacu06g0211 | 328 | ProSiteProfiles | Zinc finger SBP-type profile. | 47 | 124 | IPR004333 | GO:0003677(InterPro) | |
| Clacu06g0211 | 328 | SUPERFAMILY | SBT domain | 48 | 129 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu04g1220 | Clacu-Chr4:26372518 | Clacu06g0211 | Clacu-Chr6:2363718 | 9.40E-33 | dispersed | |
| Clacu06g0211 | Clacu-Chr6:2363718 | Clacu06g1900 | Clacu-Chr6:29396708 | 2.80E-40 | dispersed | |
| Clacu05g1518 | Clacu-Chr5:18792017 | Clacu06g0211 | Clacu-Chr6:2363718 | 9.00E-37 | transposed | |
| Clacu11g2095 | Clacu-Chr11:31730563 | Clacu06g0211 | Clacu-Chr6:2363718 | 6.50E-30 | transposed | |
| Clacu03g0383 | Clacu-Chr3:4235970 | Clacu06g0211 | Clacu-Chr6:2363718 | 1.60E-42 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47834 | PF03110 | SBP | 7.40E-29 | No_clan | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g0211 | - | - | - | 0.0 |