Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0213 ATGGGAAGAGGGAGAGTAGAATTGAAGAGAATAGAGAACAAGATCAATCGACAAGTGACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCGGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCTTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAGGCCTTGGAATTGAGCAGCCAGCAAGAGTATTTGAAGCTCAAAGCTCGCTATGAAGCTCTTCAACGATCCCAAAGGAACCTGTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTGAAGCAGATCAGATCAACAAGGACTCAGTACATGCTGGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTTCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTTCCAGGATGGTTGCCTTGA 729 43.21 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPSGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2427328 2433133 + ClG42_06g0021300.10 Clacu06g0213 250861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0213 242 FunFam MADS-box transcription factor 7 13 98 - -
Clacu06g0213 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu06g0213 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu06g0213 242 Coils Coil 126 146 - -
Clacu06g0213 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu06g0213 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu06g0213 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu06g0213 242 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0022 Clacu-Chr6:460263 Clacu06g0213 Clacu-Chr6:2427328 1.60E-56 dispersed
Clacu06g0023 Clacu-Chr6:466375 Clacu06g0213 Clacu-Chr6:2427328 6.00E-34 dispersed
Clacu06g0213 Clacu-Chr6:2427328 Clacu07g1610 Clacu-Chr7:30661794 4.40E-83 dispersed
Clacu06g0213 Clacu-Chr6:2427328 Clacu06g0214 Clacu-Chr6:2445461 2.80E-21 tandem
Clacu03g0381 Clacu-Chr3:4224575 Clacu06g0213 Clacu-Chr6:2427328 2.40E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47835 PF01486 K-box 2.90E-26 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0213 - - - 0.0