Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0217 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACAATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATCCTAGTAAGACAGCCGTTCTTGAGTCTCAAGACAGACATTCTCTTCTATGGAATGAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGGACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCCATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCACTAGACAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGATACCAATTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCAGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCAACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTAGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTCCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCGTTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAAGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGACGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCCGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACCCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTCTGCGGTTACCCATGGTGGCCATACTTCTGAAAGCCTCAATCAATGGCGGAACCCTATACTGGAAGAGCGCGATTGA 2913 42.88 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNNRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGDALDPSKTAVLESQDRHSLLWNEKENPSSPSTVDNGQCNWLYSRGKTFPMLGGCTSTEYSSPLDNHDVNSNYNIPFLKQEHGNSFEVDTNLIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKFRLWLSSQQKDRHDLAGCSLSKKEQGVIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELPKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNPAALTSLADVSGMEDSAVTHGGHTSESLNQWRNPILEERD 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2495983 2514377 + ClG42_06g0021700.10 Clacu06g0217 250865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0217 970 ProSiteProfiles IQ motif profile. 735 763 - -
Clacu06g0217 970 Pfam Ankyrin repeats (3 copies) 590 676 IPR002110 GO:0005515(InterPro)
Clacu06g0217 970 MobiDBLite consensus disorder prediction 948 962 - -
Clacu06g0217 970 ProSiteProfiles Ankyrin repeat region circular profile. 617 643 - -
Clacu06g0217 970 ProSiteProfiles IQ motif profile. 815 839 - -
Clacu06g0217 970 SMART ANK_2a 617 646 IPR002110 GO:0005515(InterPro)
Clacu06g0217 970 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Clacu06g0217 970 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Clacu06g0217 970 FunFam Calmodulin-binding transcription activator 2 791 839 - -
Clacu06g0217 970 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515(InterPro)
Clacu06g0217 970 Gene3D Immunoglobulins 383 476 IPR013783 -
Clacu06g0217 970 Gene3D - 792 839 - -
Clacu06g0217 970 Gene3D - 548 679 IPR036770 -
Clacu06g0217 970 CDD IPT 389 473 - -
Clacu06g0217 970 Pfam IPT/TIG domain 389 462 IPR002909 -
Clacu06g0217 970 SUPERFAMILY Ankyrin repeat 586 678 IPR036770 -
Clacu06g0217 970 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Clacu06g0217 970 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 921 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Clacu06g0217 970 MobiDBLite consensus disorder prediction 132 170 - -
Clacu06g0217 970 ProSiteProfiles IQ motif profile. 792 821 - -
Clacu06g0217 970 SMART iq_5 734 756 IPR000048 GO:0005515(InterPro)
Clacu06g0217 970 SMART iq_5 814 836 IPR000048 GO:0005515(InterPro)
Clacu06g0217 970 SMART iq_5 791 813 IPR000048 GO:0005515(InterPro)
Clacu06g0217 970 MobiDBLite consensus disorder prediction 131 170 - -
Clacu06g0217 970 Pfam IQ calmodulin-binding motif 817 836 IPR000048 GO:0005515(InterPro)
Clacu06g0217 970 Pfam IQ calmodulin-binding motif 794 812 IPR000048 GO:0005515(InterPro)
Clacu06g0217 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 843 IPR027417 -
Clacu06g0217 970 SUPERFAMILY E set domains 389 472 IPR014756 -
Clacu06g0217 970 MobiDBLite consensus disorder prediction 945 970 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0217 Clacu-Chr6:2495983 Clacu10g0897 Clacu-Chr10:18695465 1.30E-141 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47837 PF03859 CG-1 5.30E-48 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0217 K21596 - csv:101222798 1652.88