Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g0233 | ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTAACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGCAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTACCGAGTCATTCCGCCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCATCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGTCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAACTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCGGCGCTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA | 1053 | 42.74 | MDQFLTKTKEDQEDQEEEDEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSANDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSGAAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2713577 | 2714629 | + | ClG42_06g0023300.10 | Clacu06g0233 | 250881 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g0233 | 350 | Pfam | B3 DNA binding domain | 88 | 194 | IPR003340 | GO:0003677(InterPro) | |
Clacu06g0233 | 350 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Clacu06g0233 | 350 | MobiDBLite | consensus disorder prediction | 12 | 29 | - | - | |
Clacu06g0233 | 350 | Gene3D | - | 81 | 209 | IPR015300 | - | |
Clacu06g0233 | 350 | ProSiteProfiles | B3 DNA-binding domain profile. | 88 | 195 | IPR003340 | GO:0003677(InterPro) | |
Clacu06g0233 | 350 | Coils | Coil | 5 | 29 | - | - | |
Clacu06g0233 | 350 | CDD | B3_DNA | 86 | 175 | IPR003340 | GO:0003677(InterPro) | |
Clacu06g0233 | 350 | SMART | B3_2 | 88 | 195 | IPR003340 | GO:0003677(InterPro) | |
Clacu06g0233 | 350 | MobiDBLite | consensus disorder prediction | 318 | 350 | - | - | |
Clacu06g0233 | 350 | SUPERFAMILY | DNA-binding pseudobarrel domain | 85 | 176 | IPR015300 | - | |
Clacu06g0233 | 350 | MobiDBLite | consensus disorder prediction | 32 | 63 | - | - | |
Clacu06g0233 | 350 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 12 | 315 | IPR044800 | GO:0003700(InterPro) | |
Clacu06g0233 | 350 | FunFam | B3 domain-containing protein | 81 | 206 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2496 | Clacu-Chr5:33046443 | Clacu06g0233 | Clacu-Chr6:2713577 | 5.10E-40 | dispersed | |
Clacu06g0233 | Clacu-Chr6:2713577 | Clacu07g0810 | Clacu-Chr7:20536024 | 1.70E-51 | dispersed | |
Clacu06g0233 | Clacu-Chr6:2713577 | Clacu01g0123 | Clacu-Chr1:1193179 | 9.00E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47840 | PF02362 | B3 | 2.30E-28 | CL0405 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g0233 | K09287 | - | csv:101221141 | 528.865 |