Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0233 ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTAACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGCAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTACCGAGTCATTCCGCCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCATCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGTCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAACTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCGGCGCTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA 1053 42.74 MDQFLTKTKEDQEDQEEEDEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSANDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSGAAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL 350
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2713577 2714629 + ClG42_06g0023300.10 Clacu06g0233 250881
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0233 350 Pfam B3 DNA binding domain 88 194 IPR003340 GO:0003677(InterPro)
Clacu06g0233 350 MobiDBLite consensus disorder prediction 1 63 - -
Clacu06g0233 350 MobiDBLite consensus disorder prediction 12 29 - -
Clacu06g0233 350 Gene3D - 81 209 IPR015300 -
Clacu06g0233 350 ProSiteProfiles B3 DNA-binding domain profile. 88 195 IPR003340 GO:0003677(InterPro)
Clacu06g0233 350 Coils Coil 5 29 - -
Clacu06g0233 350 CDD B3_DNA 86 175 IPR003340 GO:0003677(InterPro)
Clacu06g0233 350 SMART B3_2 88 195 IPR003340 GO:0003677(InterPro)
Clacu06g0233 350 MobiDBLite consensus disorder prediction 318 350 - -
Clacu06g0233 350 SUPERFAMILY DNA-binding pseudobarrel domain 85 176 IPR015300 -
Clacu06g0233 350 MobiDBLite consensus disorder prediction 32 63 - -
Clacu06g0233 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 315 IPR044800 GO:0003700(InterPro)
Clacu06g0233 350 FunFam B3 domain-containing protein 81 206 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2496 Clacu-Chr5:33046443 Clacu06g0233 Clacu-Chr6:2713577 5.10E-40 dispersed
Clacu06g0233 Clacu-Chr6:2713577 Clacu07g0810 Clacu-Chr7:20536024 1.70E-51 dispersed
Clacu06g0233 Clacu-Chr6:2713577 Clacu01g0123 Clacu-Chr1:1193179 9.00E-53 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47840 PF02362 B3 2.30E-28 CL0405 Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0233 K09287 - csv:101221141 528.865