Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0268 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCCCCGGCTCTCTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGCGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTAAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTAAGTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCCTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACGCAATCACAAAGATCGAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCTTCCCCATCAAAATCTCGACCAGTCCAGCAAGTTCGGTCGGCGAGTCCCCGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACATTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1530 50.33 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSTHSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPRYSREDRNQISHHITSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIAGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3253824 3256131 + ClG42_06g0026800.10 Clacu06g0268 250916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0268 509 MobiDBLite consensus disorder prediction 283 446 - -
Clacu06g0268 509 SMART iq_5 102 124 IPR000048 GO:0005515(InterPro)
Clacu06g0268 509 SMART iq_5 125 146 IPR000048 GO:0005515(InterPro)
Clacu06g0268 509 MobiDBLite consensus disorder prediction 484 509 - -
Clacu06g0268 509 ProSiteProfiles IQ motif profile. 103 131 - -
Clacu06g0268 509 FunFam IQ-domain 11 102 153 - -
Clacu06g0268 509 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515(InterPro)
Clacu06g0268 509 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515(InterPro)
Clacu06g0268 509 PANTHER IQ-DOMAIN 5-RELATED 9 438 - -
Clacu06g0268 509 Gene3D - 100 157 - -
Clacu06g0268 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 148 IPR027417 -
Clacu06g0268 509 Pfam Protein of unknown function (DUF4005) 363 469 IPR025064 -
Clacu06g0268 509 ProSiteProfiles IQ motif profile. 127 154 - -
Clacu06g0268 509 MobiDBLite consensus disorder prediction 304 363 - -
Clacu06g0268 509 MobiDBLite consensus disorder prediction 402 425 - -
Clacu06g0268 509 MobiDBLite consensus disorder prediction 17 38 - -
Clacu06g0268 509 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0018 Clacu-Chr5:419461 Clacu06g0268 Clacu-Chr6:3253824 1.30E-114 dispersed
Clacu05g0932 Clacu-Chr5:8259146 Clacu06g0268 Clacu-Chr6:3253824 4.30E-18 dispersed
Clacu06g0268 Clacu-Chr6:3253824 Clacu09g0077 Clacu-Chr9:742456 5.20E-17 dispersed
Clacu06g0268 Clacu-Chr6:3253824 Clacu09g2069 Clacu-Chr9:35494288 7.00E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0268 - - - 0.0