Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g0278 | ATGTCGTTGAGTAGCGAAATCGAAAGCCTTTGGGTTCTGGCTTTGGCTTCCAAATGCTCAGCTCTCACTAAACAAAACATCTTTTTCTCTCTACTTCTTCTCCTCCTAATTTGGTTTTTCCTTTCCATTTTCTATTGGGCCCATCCTGGCGGCCCAGCTTGGGGCCGCCGCCGCAATTCCTCCTCCTCCTCCTCCTCCGCCACCATCCCTGGCCCAAGAGGCCTCCCCCTCATCGGCAGTATGAGCTTGATGACGGGTCTGGCCCACCAAAAGATCGCCGCCATGGCCAAATCTCTAGGAGCTACTCGTCTCATGGCTTTCTCACTCGCCAACACTCGCGTGATTGTCACATGCCACCCAGACGTAGCTAAAGACATCCTAAACAGTTCCGTCTTCGCTGACCGTCCGATCAAAGAATCAGCTTACTCTTTGATGTTCAATCGTGCCATTGGATTTGCTCCTTACGGACTTTACTGGCGAACCCTCCGACGAATCGCTTCACACCATCTCTTCTGCCCTAAACAAATCAAATCCTCTGAATCACAACGCCGCCAAATCGCTTCCCAAATGGTCAAAATCTTGTCTTCCACTGCCGCCACCTCATCCTCTCTCCACATTCGTCAAACTCTTAAAACCGCCTCTTTGAATAGCATGATGGGTTCGGTTTTCGGCCGGTTTTACAATCTCTCCGACTCTAATCCTGAAGTCCAACTCCTCCAAAGCCTTGTGAATGAAGGGTATGATTTACTAGGCCTTCTTAACTGGTCCGACCATCTTCCCTTTTTGGCTGATTTCGACCCACAAAAAATCCGGTTCAGATGCTCCCGGTTGGTTCCACAGGTGAACCGCTTCGTCACCCGGATCATCAACCAACATCGGCAAAATTCATCCCAACAAACCATGGATTTCGTCCATGTTCTTCTCTCTCTTCAACAAAACGACAACCTCTCTGACTCCGATATTATCTCCGTTCTTTGGGAAATGATATTTAGAGGAACAGACACGGTAGCGGTTTTAATCGAGTGGATTCTAGCGAGGATGGTGGTTCACAAGGAGGAGCAACAAAAAATACAAGAGGAATTAGATAAGGTGGTTGGGAGATCACGTGCCGTCGTGGAATCCGACATTCCGTCGTTGGTTTATTTAACCGCGGTGGTTAAGGAAGTTCTAAGGTTGCATCCACCCGGCCCACTTCTGTCTTGGGCTCGTCTTGCTATTACCGATACAATCGTCGATGGTCATCACGTGCCTCGTGGGACCACTGCCATGGTTAACATGTGGTCGATAGCGCGGGACCCACAAATCTGGTCGGACCCACTTGAATTTATTCCTGAGAGGTTTCTCTCTGGTGGTGCTGACTTGGAGTTTTCGATTATGGGTTCGGATCTACGACTAGCTCCATTCGGGTCGGGTCGAAGGACTTGTCCTGGGAAGGCACTTGCTTGGACAACTGTCACATTTTGGGTGGCTACGCTATTACATGAATTTAAATGGTTGCCTTCTCCTGATCAAAACGACGCCGTCGACTTCTCTGAGGTTCTTAAGCTCTCTTGTGAGATGGCTAGTCCACTCACGGTTAAACTATGCCCAAGGCGCACTTAA | 1602 | 49.25 | MSLSSEIESLWVLALASKCSALTKQNIFFSLLLLLLIWFFLSIFYWAHPGGPAWGRRRNSSSSSSSATIPGPRGLPLIGSMSLMTGLAHQKIAAMAKSLGATRLMAFSLANTRVIVTCHPDVAKDILNSSVFADRPIKESAYSLMFNRAIGFAPYGLYWRTLRRIASHHLFCPKQIKSSESQRRQIASQMVKILSSTAATSSSLHIRQTLKTASLNSMMGSVFGRFYNLSDSNPEVQLLQSLVNEGYDLLGLLNWSDHLPFLADFDPQKIRFRCSRLVPQVNRFVTRIINQHRQNSSQQTMDFVHVLLSLQQNDNLSDSDIISVLWEMIFRGTDTVAVLIEWILARMVVHKEEQQKIQEELDKVVGRSRAVVESDIPSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTIVDGHHVPRGTTAMVNMWSIARDPQIWSDPLEFIPERFLSGGADLEFSIMGSDLRLAPFGSGRRTCPGKALAWTTVTFWVATLLHEFKWLPSPDQNDAVDFSEVLKLSCEMASPLTVKLCPRRT | 533 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3417367 | 3419052 | + | ClG42_06g0027800.10 | Clacu06g0278 | 250926 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g0278 | 533 | PANTHER | CYTOCHROME P450 78A7-RELATED | 5 | 527 | IPR051996 | - | |
| Clacu06g0278 | 533 | PRINTS | E-class P450 group I signature | 320 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | E-class P450 group I signature | 383 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | E-class P450 group I signature | 465 | 475 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | E-class P450 group I signature | 340 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | E-class P450 group I signature | 425 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | E-class P450 group I signature | 475 | 498 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | E-class P450 group I signature | 213 | 231 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | P450 superfamily signature | 466 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | P450 superfamily signature | 384 | 395 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | P450 superfamily signature | 475 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | PRINTS | P450 superfamily signature | 331 | 348 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | FunFam | Cytochrome P450 78A5 | 61 | 531 | - | - | |
| Clacu06g0278 | 533 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 468 | 477 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu06g0278 | 533 | Gene3D | Cytochrome P450 | 55 | 528 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | SUPERFAMILY | Cytochrome P450 | 69 | 531 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0278 | 533 | CDD | CYP78 | 100 | 524 | - | - | |
| Clacu06g0278 | 533 | Pfam | Cytochrome P450 | 70 | 506 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g0278 | Clacu-Chr6:3417367 | Clacu11g1556 | Clacu-Chr11:26668648 | 2.60E-128 | dispersed | |
| Clacu06g0278 | Clacu-Chr6:3417367 | Clacu08g1206 | Clacu-Chr8:21978404 | 3.20E-134 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g0278 | K20619 | - | csv:101216159 | 907.901 |