Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0300 ATGAAGGCCATGCCCTTACCCTTCCCTTTTGAAGAGCTTCGTCCAAATGGGGTTTTGAATTTCACTTCTGTTTCTGATTCTCCGCCGCCGCCGACCTTGCTCCGCCGTCACAACCTCCGTGAGCACTGGAGTTGTACTGATAATACCAATCTGCTCAAAGAGATTTGCTATGTGGGTGCTGCCGAACCCACCTCTGTTCTCGATACTAGAAGAAGCCCAAGCCCTCCCACTTCCACTTCCACACTGTCTTCCTCTCTCGGCGGCGGCGGCGGTGGTGGTGGTACCGCCTCCACCGACACGACCGTGGCGGCGCCGCCGTCTTCTCTCCCTGAAAACCCTTCTCCTTTAGACAAATGCGGTGGCGGTGGCGGCCTTGGAATTGATGATTGGGAGAGCGTTTTGCCGGAATCCCCTGGTCAAGGTCCCTCCATTCTTGGGTTAATTATGAGCGATGTTGAAGATCCATCTCTTGGATTGAATAAGCTCCTGCAGAGCGGCGGTGGCGGTGGCGGTGGCGGTGGTTCTCATCTGGACTTGGAATTTTCCGTCGATCATGGGTTGGTCTTTGAAGCCAATACTCTCGCCGGTGAATCCATTGTCGACCCATCTCTTCAAGGCCCATCTTGCTCCGATTTCCACAATGCTAGACTCGCGGCGGCGGTGTCGAACTCAAACGCCATGTTTTCCGGTGTGTTTCAGAATCAAAATCAGATGGTGGAAGGCGTTGACGAGAAGCCACAGATTTTCAATTCTTCCCAAGTTGTGATGAATCAAAATCAAACTCAGTTCACTCAGAATCCAGCTCTGTTTATGCCTCTTCCTTATGCCTCCCCTGTCCAAGACCACCATCAGAACCACCACCACCACCACCTCCTTGGTGGTGCGCCGCCCGCAAAGCGGTTCAATTCCGGTTCAATTGGGCCAAATTATCCAGTGAAATCCCCATTTTTGGATTCGGGTCAAGAAAATTTCAATCGTAGACAACAACAACAGCCCCAACAAGTTCAGTTGTTTCCTCATCATTCCCATCATCACAACCTTCCTCAGCAGCAGCAGAGGCCATCCATGGCGGCCTTAGCAAAACAGAAAATGGTGAATGAAGATATAGCGAATCAACAACTCCAACAGGGCATTTCCGACCAGCTATTCAAGGCCGTAGAGCTGATCGAAACAGGCAATTCAGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCCATTGGGAAGCCCTTTCAAAGGGCTGCTTTCTACTTCAGGGAGGCCTTGCAATTGCTCCTTCAAAACCCTTCAAACCCATCCACCAATCCCAACCCTTCCCCTTTCTCCATCATTTTCAAAATCGCTGCTTACAAATCCTTCTCTGAAGTCTCCCCTGTTCTCCAATTTGCCAATTTCACCTCTAACCAAGCTCTCCTAGAAGCCTTCAATGGCTGCGATCGTGTTCACATCATCGATTTCGACATTGGTTACGGTGGCCAATGGGCTTCTCTAATGCAAGAACTTGCTTTGAGAAGTAACACCACTGGAGGAGGACCCCCATTTCTCAGAATCACTGCCTTTGCTTCTACTTCCACACACGATGATTTCGAGCTCGGTTTCACTCAAGAAAACCTCAAGAATTTCGCAAACGATCTCAACATTGGATTCGAGCTCGAAGTCGTAAATGTAGAGTGTCTGAATTCTGGGTCTTGGCCTCTGCCACTCAATGTCTCTGAAGATGAAGCAATTGCAGTGAATCTCCCTGTGGGTTCATTCTTCAATTACTCACTTTCATTGCCAATGATTCTCCGTTTCATAAAACATCTTAACCCCAAAATCGTAGTGTCTGTGGATCGAGGTTGTAGCCGTATGGACGCGCCATTCCCACATCGAGTAATCAACGCTCTTCATTCATACTCTGCTTTGCTTGAATCCATGGAAGCTGTAACTATGAATATGGATACCCAATTGAAAATTGAAAGGTACTTGGTGCAACCATGTATTGAGAAAGTGGTAACAAATCCTCAATGTTCAAACGAAAGGGTTCCTCCATGGAAATCAGTGTTCTTATCATCTGGGTTTTGTCCATTGACATTCAGTAATTTCACGGAATCACAGGCAGAGTGTCTGCTGCAGCGGACGCCGGTTCAAGGATTTCATATCGACAAGAGACACTCCTCGCTTGTTCTTTGCTGGCATCGGAAGGAGCTCGTTTCAATCTCTGCTTGGAGGTCTTAA 2232 48.75 MKAMPLPFPFEELRPNGVLNFTSVSDSPPPPTLLRRHNLREHWSCTDNTNLLKEICYVGAAEPTSVLDTRRSPSPPTSTSTLSSSLGGGGGGGGTASTDTTVAAPPSSLPENPSPLDKCGGGGGLGIDDWESVLPESPGQGPSILGLIMSDVEDPSLGLNKLLQSGGGGGGGGGSHLDLEFSVDHGLVFEANTLAGESIVDPSLQGPSCSDFHNARLAAAVSNSNAMFSGVFQNQNQMVEGVDEKPQIFNSSQVVMNQNQTQFTQNPALFMPLPYASPVQDHHQNHHHHHLLGGAPPAKRFNSGSIGPNYPVKSPFLDSGQENFNRRQQQQPQQVQLFPHHSHHHNLPQQQQRPSMAALAKQKMVNEDIANQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFREALQLLLQNPSNPSTNPNPSPFSIIFKIAAYKSFSEVSPVLQFANFTSNQALLEAFNGCDRVHIIDFDIGYGGQWASLMQELALRSNTTGGGPPFLRITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEVVNVECLNSGSWPLPLNVSEDEAIAVNLPVGSFFNYSLSLPMILRFIKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAVTMNMDTQLKIERYLVQPCIEKVVTNPQCSNERVPPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWRS 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3713774 3716005 - ClG42_06g0030000.10 Clacu06g0300 250948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0300 743 MobiDBLite consensus disorder prediction 66 127 - -
Clacu06g0300 743 MobiDBLite consensus disorder prediction 67 107 - -
Clacu06g0300 743 Pfam GRAS domain family 380 742 IPR005202 -
Clacu06g0300 743 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 352 741 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu06g0300 743 ProSiteProfiles GRAS family profile. 369 742 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0300 Clacu-Chr6:3713774 Clacu10g0268 Clacu-Chr10:3322667 5.60E-137 dispersed
Clacu06g0300 Clacu-Chr6:3713774 Clacu07g0900 Clacu-Chr7:22596275 5.70E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47850 PF03514 GRAS 1.80E-98 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0300 K27747 - csv:101214718 1278.08