Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0341 ATGGAGTCCAGTTCTTTTGATCAGAGCAGGGGTGTGCCCACCCATGGTGGTCGATACATTCAATACAATGTGTATGGGAATCTATTTGAAGTTCCTAGGAAGTATACTCCACCCATAAGGCCAGTTGGGAGAGGAGCTTATGGAATTGTATGTGCTGCTTTGAACTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGATGCTAAAAGGACGTTACGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATCACTGCTCTCAAAGATATTATAAGACCTCCTCAAAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGATACGGATCTAAATCAGATAATACGGTCCAACCAATCATTGACTGATGACCATTGCCGGTTCTTTCTGTACCAGTTGTTACGAGGGCTAAAATATGTACATTCTGCTAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTCCTCAATGCAAATTGTGACCTAAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACCGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGCTCAGAATACACTGGAGCAATCGATATCTGGTCTGTTGGCTGTATACTCGGTGAAATTATTCACAGACAACCATTGTTTCCTGGAAGAGACTATGTCCATCAGCTAAAACTTATCACTGAGCTCATTGGTTCACCCGATGACTCAAGTCTCGGATTCTTACGAAGTGACAATCCACGAAGATATTTTAGACATCTTCCTCACTTCCCCAAGCAACAGTTTTCCACTAGATTTCCCACCATGTCTCCTGCTGCCATTGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGAGGAGGCTCTATGCCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCAAGGCCTTTCAGTTTTGATTTCGAGCAACCATCGTATACCGAAGAGAACATCAAGGAACTTGTATGGAGAGAATCTGTGAAGTTCAACCCCGATCCCGCTTTTTGA 1110 41.62 MESSSFDQSRGVPTHGGRYIQYNVYGNLFEVPRKYTPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENITALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRFFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIIHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPKQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVEEALCHPYLAPLHDINEEPVCPRPFSFDFEQPSYTEENIKELVWRESVKFNPDPAF 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4147476 4151694 + ClG42_06g0034100.10 Clacu06g0341 250989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0341 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 29 358 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu06g0341 369 SUPERFAMILY Protein kinase-like (PK-like) 39 329 IPR011009 -
Clacu06g0341 369 Gene3D Transferase(Phosphotransferase) domain 1 120 349 - -
Clacu06g0341 369 SMART serkin_6 36 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0341 369 ProSitePatterns MAP kinase signature. 71 174 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0341 369 CDD STKc_TEY_MAPK 29 365 - -
Clacu06g0341 369 Gene3D Phosphorylase Kinase; domain 1 19 359 - -
Clacu06g0341 369 FunFam Mitogen-activated protein kinase 120 349 - -
Clacu06g0341 369 Pfam Protein kinase domain 40 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0341 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0341 369 ProSiteProfiles Protein kinase domain profile. 36 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0341 369 ProSitePatterns Protein kinases ATP-binding region signature. 42 66 IPR017441 GO:0005524(InterPro)
Clacu06g0341 369 FunFam Mitogen-activated protein kinase 21 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0215 Clacu-Chr3:2385719 Clacu06g0341 Clacu-Chr6:4147476 1.20E-167 dispersed
Clacu06g0341 Clacu-Chr6:4147476 Clacu08g1174 Clacu-Chr8:21726395 2.30E-160 dispersed
Clacu01g0238 Clacu-Chr1:2331653 Clacu06g0341 Clacu-Chr6:4147476 4.80E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73622 PF00069 Pkinase 1.30E-70 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0341 K20600 - csv:101215189 724.161