Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0346 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTTTTCCTTTTCTTTTCTCTGCCATCTCTCTCCTTCTCCATCTCGAAAGATGAAGCTTCGTATCTCACTCATCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAACTGGCCATTTATTCTGACCCTCAAAACATGACAGCCAATTGGGTTGGCGCCGATGTATGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACGACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCGGAAATTGGCCTTATCACCGATTTGGCGCTCTTCCATATTAATTCTAATAGGTTTTGTGGGATCATTCCTTCCAGCTTTTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAATCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTTCGGTATAATGACTTCGAAGGAGAAGTCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACTGTCTCTGTTGTCTCCTTTGCCAACAATGAGTTCCATGGTTGCATACCCAGCACTATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTCGACGGCTGTTTCCCACCCGAGATAGGAAACCTCGTCAATCTTACGGTCTTCGATGCCAGTGCCAATGGCTTCATTGGGCATCTGCCCGAAACCTTATCTGGCCTCCAAAATTTGGAGATCATGGACGTTAGCAACAATGAATTAAGGGGCTCTGTTCCTGGAGGCCTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCGAAGATGCAACGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTCGATGATGCTCAAAATTGTTTGGCGAATCAACCGGAGCAGAAAGATGCAAACAAATGTAACGTTGTCCTAAAGAAATCTGTGGATTGTGGATGCAGTGGTGGTGGTTCAGGTTCTCCCGGAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGATCTCTCCACCAGAATCGATCGACACCTTGGTCCCAGAAGTGGAGACTCCTTCTGCCCCATCATTGTCACCAATCTCTGCTCCGTTCTCACCACCTAACCTTGAAACCCCCAATCCATCCCCAGTTGACTCTCTCGAACCACCGGTTCACTCACCACCACCCCCAGTCCATTCTCCACCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCCCCTGTTCACTCCCCACCACCACCTGTCTCTTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTTCACTCTCCACCTCCACCGGTCCACTCCCCACCACCACCGATCCACTCCCCACCACCACCGGTCCACTCCCCACCACCTCCACCAATTCCTTCTCCACCTCCTCCGGTCCACTCTCCACCACCACCGGTCCACTCCCCACCTCCACCTGTCCACTCCCCACCACCCCCGGTCCACTCTCCACCACCTCCGGTCCACTCCCCACCACCCCCGGTCCACTCCCCACCCCCACCAGTTTACTCCCCACCTCCACCAGTCCATTCTCCACCACCACCGATACACTCCCCACCCCCACCGGTTCATTCCCCACCCCCACCAGTTCATTCTCCACCGCCACCGGTCTACTCCCCACCGCCACCTGTCCATTCTCCACCACCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCAACTGCATCTCCGCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCAACATTCGAGGACGTCATCCTCCCTCCAAATATCGGCTTTCAATACACATCACCACCTCCACCACAGTTTCCTGGCTATTAA 2160 51.81 MASFHRKQANHACFLLLFLFFSLPSLSFSISKDEASYLTHRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDDSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLDGCFPPEIGNLVNLTVFDASANGFIGHLPETLSGLQNLEIMDVSNNELRGSVPGGLCKLPKLANFTFSFNYFDGEDATCVGTKGSEKLFDDAQNCLANQPEQKDANKCNVVLKKSVDCGCSGGGSGSPGVPMTPEDPFDQSPSPRYRSPPPPVISPPESIDTLVPEVETPSAPSLSPISAPFSPPNLETPNPSPVDSLEPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPPIPSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPTFEDVILPPNIGFQYTSPPPPQFPGY 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4213982 4216141 - ClG42_06g0034600.10 Clacu06g0346 250994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0346 719 PRINTS Proline rich extensin signature 488 513 - -
Clacu06g0346 719 PRINTS Proline rich extensin signature 413 425 - -
Clacu06g0346 719 PRINTS Proline rich extensin signature 425 446 - -
Clacu06g0346 719 PRINTS Proline rich extensin signature 452 468 - -
Clacu06g0346 719 PRINTS Proline rich extensin signature 470 487 - -
Clacu06g0346 719 MobiDBLite consensus disorder prediction 450 698 - -
Clacu06g0346 719 MobiDBLite consensus disorder prediction 408 431 - -
Clacu06g0346 719 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Clacu06g0346 719 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Clacu06g0346 719 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Clacu06g0346 719 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Clacu06g0346 719 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Clacu06g0346 719 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 618 IPR051582 -
Clacu06g0346 719 MobiDBLite consensus disorder prediction 394 719 - -
Clacu06g0346 719 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Clacu06g0346 719 SUPERFAMILY L domain-like 83 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2138 Clacu-Chr5:30094952 Clacu06g0346 Clacu-Chr6:4213982 5.60E-39 dispersed
Clacu06g0346 Clacu-Chr6:4213982 Clacu06g0351 Clacu-Chr6:4235954 6.20E-08 dispersed
Clacu06g0346 Clacu-Chr6:4213982 Clacu06g0347 Clacu-Chr6:4221529 6.20E-08 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0346 - - - 0.0