Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0347 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCATCTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCTGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCGTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGAAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTGAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCAAGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTAAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTACTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATTATTATCACCAACCTCCGCTCCGATCTCACCACCTACCCTTGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACTAATTCACTCACCACCACCCCCAGCCCATTCCCCGCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCTACTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCACTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCACCTATCCACTCCCCACCACCACCGGTCCACTCCCCACCACCCCCTGTCCACTCACCACCACCCCCCATTTATTCCCCCCCACCACCCGTCCACTCACCACCACCCCCCGTCCACTCTCCCCCACCCCCCGTCCATTCACCACCACCACCCGTCCACTCTCCACCCCCACCAGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCGGTGCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCGACTGCATCTCCACCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTTCAATATGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2292 52.4 MASLHRKQANHACFLLLFIFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVETKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGGSSSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPKSIDTSVPEVGTPPSPSETTITSSPPSPIEYSPPTSAPQLSPTSAPLLSPTSAPISPPTLETPSPSPAESPEPLIHSPPPPAHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVSSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPIYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4221529 4223820 + ClG42_06g0034700.10 Clacu06g0347 250995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0347 763 MobiDBLite consensus disorder prediction 482 742 - -
Clacu06g0347 763 SUPERFAMILY L domain-like 83 347 - -
Clacu06g0347 763 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Clacu06g0347 763 MobiDBLite consensus disorder prediction 433 457 - -
Clacu06g0347 763 Gene3D Ribonuclease Inhibitor 237 357 IPR032675 -
Clacu06g0347 763 PRINTS Pistil-specific extensin-like signature 485 508 IPR003882 -
Clacu06g0347 763 PRINTS Pistil-specific extensin-like signature 520 538 IPR003882 -
Clacu06g0347 763 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 655 IPR051582 -
Clacu06g0347 763 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Clacu06g0347 763 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Clacu06g0347 763 MobiDBLite consensus disorder prediction 467 481 - -
Clacu06g0347 763 MobiDBLite consensus disorder prediction 409 432 - -
Clacu06g0347 763 MobiDBLite consensus disorder prediction 396 763 - -
Clacu06g0347 763 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Clacu06g0347 763 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0347 Clacu-Chr6:4221529 Clacu06g0351 Clacu-Chr6:4235954 6.00E-09 dispersed
Clacu06g0346 Clacu-Chr6:4213982 Clacu06g0347 Clacu-Chr6:4221529 6.20E-08 tandem
Clacu06g0347 Clacu-Chr6:4221529 Clacu06g0348 Clacu-Chr6:4225500 6.50E-32 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0347 - - - 0.0