Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0351 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCCCTTCCTCTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCTGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCGTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTGAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTTCAAGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTAAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTTCTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCTGCTCCGATCTCACCACCTACCCTTGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACCAATTCATTCACCACCACCCCCAGTCCATTCCCCGCCACCATCGGTCTATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCAATTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCACCTATCCACTCCCCACCACCCCCGGTCCACTCACCACCACCACCCGTCCACTCACCCCCACCCCCCGTCCACTCACCACCCCCACCAGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCGGTTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCACCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTTCAATATGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2163 51.32 MASLHRKQANHACFLLPFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGSSSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPKSIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSAPISPPTLETPSPSPAESPEPPIHSPPPPVHSPPPSVYSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVSSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4235954 4238116 + ClG42_06g0035100.10 Clacu06g0351 250999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0351 720 MobiDBLite consensus disorder prediction 408 431 - -
Clacu06g0351 720 SUPERFAMILY L domain-like 83 348 - -
Clacu06g0351 720 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 326 - -
Clacu06g0351 720 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Clacu06g0351 720 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Clacu06g0351 720 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Clacu06g0351 720 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Clacu06g0351 720 MobiDBLite consensus disorder prediction 396 720 - -
Clacu06g0351 720 MobiDBLite consensus disorder prediction 432 456 - -
Clacu06g0351 720 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Clacu06g0351 720 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 717 IPR051582 -
Clacu06g0351 720 MobiDBLite consensus disorder prediction 481 699 - -
Clacu06g0351 720 PRINTS Pistil-specific extensin-like signature 484 507 IPR003882 -
Clacu06g0351 720 PRINTS Pistil-specific extensin-like signature 519 537 IPR003882 -
Clacu06g0351 720 MobiDBLite consensus disorder prediction 466 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0346 Clacu-Chr6:4213982 Clacu06g0351 Clacu-Chr6:4235954 6.20E-08 dispersed
Clacu06g0347 Clacu-Chr6:4221529 Clacu06g0351 Clacu-Chr6:4235954 6.00E-09 dispersed
Clacu06g0348 Clacu-Chr6:4225500 Clacu06g0351 Clacu-Chr6:4235954 2.50E-32 dispersed
Clacu06g0351 Clacu-Chr6:4235954 Clacu06g1101 Clacu-Chr6:20726194 6.20E-40 dispersed
Clacu06g0349 Clacu-Chr6:4226119 Clacu06g0351 Clacu-Chr6:4235954 4.80E-18 proximal
Clacu06g0351 Clacu-Chr6:4235954 Clacu06g0352 Clacu-Chr6:4239621 7.30E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0351 - - - 0.0