Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0352 ATGGCTTCTCCTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTCTTTTTGTCTCTGCCATCTCTCTCCGTCTCCATCTCAGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGGGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAACTAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCATGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAATGGACTGTGGAAACTGTGGTAGTGGTGGTTTAGGTTCTCCCAAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCACCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGTACCACCAGTTCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTTCATTCCCCACCACCACCAATTCATTCCCCACCACCTCCTGTTAACTCTCCTCCACCACCGGTCCATTCTCCTCCACCACCAGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCGCCAGTCCACTCCCCTCCACCTCCTGTTCACTCCCCACCACCACCTGTCTCTTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCGGTCCACTCCCCACCTCCTCCTATCTACTCTCCACCACCACCGATCCACTACCCACCTCCACCGGTCCACTCCCCACCTCCACCAGTCCATTCCCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCTACTCTCCACCGCCACTGGTCTACTCCCCACCACCCCCGGTCCATTCTCCACCAACTCCTGTTTACTCTCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 1932 50.67 MASPHRKQANHACFLLLFLFLSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMGVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLTNFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSMDCGNCGSGGLGSPKVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPVHSPPPPIYSPPPPIHYPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPLVYSPPPPVHSPPTPVYSPPPPVQSPPPPTASPPPDSSPPPSFEDIILPPNIGFQYASPPPPQFPGY 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4239621 4241552 + ClG42_06g0035200.10 Clacu06g0352 251000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0352 643 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Clacu06g0352 643 SUPERFAMILY L domain-like 83 348 - -
Clacu06g0352 643 MobiDBLite consensus disorder prediction 397 534 - -
Clacu06g0352 643 MobiDBLite consensus disorder prediction 409 534 - -
Clacu06g0352 643 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 640 IPR051582 -
Clacu06g0352 643 PRINTS Proline rich extensin signature 454 471 - -
Clacu06g0352 643 PRINTS Proline rich extensin signature 416 437 - -
Clacu06g0352 643 PRINTS Proline rich extensin signature 437 453 - -
Clacu06g0352 643 PRINTS Proline rich extensin signature 472 497 - -
Clacu06g0352 643 MobiDBLite consensus disorder prediction 547 622 - -
Clacu06g0352 643 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 326 - -
Clacu06g0352 643 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Clacu06g0352 643 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Clacu06g0352 643 Gene3D Ribonuclease Inhibitor 239 387 IPR032675 -
Clacu06g0352 643 MobiDBLite consensus disorder prediction 547 643 - -
Clacu06g0352 643 Gene3D Ribonuclease Inhibitor 72 238 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0352 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0349 Clacu-Chr6:4226119 Clacu06g0352 Clacu-Chr6:4239621 1.40E-17 dispersed
Clacu06g0352 Clacu-Chr6:4239621 Clacu11g0393 Clacu-Chr11:3618939 4.70E-39 dispersed
Clacu06g0351 Clacu-Chr6:4235954 Clacu06g0352 Clacu-Chr6:4239621 7.30E-09 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0563 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 3.6e-49 193.7
Clacu11g0393 . 73 424 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 6.7e-48 189.5
Clacu07g0234 . 27 374 Leucine-rich Repeat extension Gene Families AT1G62440 56.7 4.5e-44 176.8
Clacu05g2138 . 73 266 Leucine-rich Repeat extension Gene Families AT1G62440 60.8 2.1e-41 167.9
Clacu06g1101 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 7.9e-41 166.0
Clacu11g0393 . 38 424 Leucine-rich Repeat extension Gene Families AT4G13340 75.8 5.8e-73 272.7
Clacu06g1101 . 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.3 1.4e-66 251.5
Clacu05g0563 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.6 5.0e-56 216.5
Clacu05g2138 . 73 260 Leucine-rich Repeat extension Gene Families AT4G13340 67.6 7.4e-44 176.0
Clacu07g0234 . 38 375 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 9.7e-44 175.6
Clacu06g0347 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.4e-39 161.8
Clacu06g0352 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 57.3 1.9e-39 161.4
Clacu06g0351 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 2.5e-39 161.0
Clacu06g0346 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 1.6e-38 158.3
Clacu11g0393 . 38 420 Leucine-rich Repeat extension Gene Families AT3G24480 74.5 1.1e-77 287.7
Clacu06g1101 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 8.4e-73 271.6
Clacu05g0563 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 1.8e-54 210.7
Clacu07g0234 . 45 396 Leucine-rich Repeat extension Gene Families AT3G24480 58.5 2.6e-45 180.3
Clacu05g2138 . 73 260 Leucine-rich Repeat extension Gene Families AT3G24480 66.0 4.4e-45 179.5
Clacu06g0347 . 25 399 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 2.5e-40 163.7
Clacu06g0352 . 34 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.5 2.1e-39 160.6
Clacu05g0563 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.7 6.8e-72 268.5
Clacu07g0234 . 45 374 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 1.9e-50 197.2
Clacu11g0393 . 85 418 Leucine-rich Repeat extension Gene Families AT3G22800 64.0 1.6e-41 167.5
Clacu06g1101 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.4e-38 155.2
Clacu06g1101 . 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 2.8e-40 163.3
Clacu11g0393 . 59 418 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 7.0e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92