Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0375 ATGGATCGAAGGGATCCGATGGCGTTATCAGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGAAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGAGTAGTTGCCAGTGAGCCTGTGAAACGCAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCTTCTGCTGTAAATCCAGCCACTGTAGCTTCTTCCCCAAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAAATGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCCAAGATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTTACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTCGAGATAATATGTCTGTCGGGCTCTTATGCTCTTGGAGAAGTTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCTAGCCCTGATGGGCGCGTTATCGGTGGTGGAGTAGGAGGAGCGCTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGTTTCATGTGGGGCAGTTCGAAGTCAAAGTACAAGAAGAGGGAAGCTGTTGAAGGCGTGATCGACTCGGATCATCAGTCGGTAGATCATGCAGTTGCAATCGCAAACGTGCAGCAGAATCAGAATCTGACTCCAACGTCCTCAGTTAGCATGTGGCCATCCTCGCAGTCTCTGGACATGCGCAATGCTCACATTGACATCGATCTGATGCGCGGTTGA 1005 51.44 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQMASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEVAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4477924 4481213 + ClG42_06g0037500.10 Clacu06g0375 251023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0375 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Clacu06g0375 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Clacu06g0375 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Clacu06g0375 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Clacu06g0375 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Clacu06g0375 334 CDD DUF296 150 264 IPR005175 -
Clacu06g0375 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Clacu06g0375 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Clacu06g0375 334 Gene3D - 151 283 - -
Clacu06g0375 334 MobiDBLite consensus disorder prediction 11 52 - -
Clacu06g0375 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Clacu06g0375 334 MobiDBLite consensus disorder prediction 98 114 - -
Clacu06g0375 334 MobiDBLite consensus disorder prediction 1 135 - -
Clacu06g0375 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0375 Clacu-Chr6:4477924 Clacu08g1080 Clacu-Chr8:20814560 4.50E-62 dispersed
Clacu11g2082 Clacu-Chr11:31643692 Clacu06g0375 Clacu-Chr6:4477924 2.20E-52 transposed
Clacu01g0278 Clacu-Chr1:2736044 Clacu06g0375 Clacu-Chr6:4477924 3.70E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0375 - - - 0.0