Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g0396 | ATGTGGGAGCCCTCCTTGGTAGTGTGGACATTTTTCATTCTTACATTGTTGTCCATTACTTTCCTTTCAAAAATACTTAAAAATGGAAAGTACATTGGCCAAGATGATCAAAGTCAGAGGAGATACAAATTTCCTCCAGGGAGAAGAAGCTGGCCTGTTATAGGTGATAGCTTCCATTGGTACTCTGCCATTGCAAGTTCTCATCCTTCCAAGTATGTTGAAGAACAGGCCAAAAGATACGGGAAGATCTTCTCGTGTCGTATTTTTGGAAAATGCACAGTAGTATCGATCGATCCAAAATTTAATAGGTATGTGATGCAAAACGAAGGAACGTTGTTTCAATCAAGTTATCCCAAATCTTTCCGAGATTTGGTAGGCCTCAATGGTGTCATCACAGTCCAAGGGGAACAACAAAGGAAACTCCACGCAATTGCTTCCAATTTTATGCGTATAAACAAACTCAACTTTAGCTTCCTAAAAGATATTCAAACCATAATTATCCATTCCTTGACCACTTTCCATGACGGTCATCATCAAGTCATATCTCTCCAAGATGCTTGCAGGAAGATTGCCATTAATCTAATGGTAAGTCAACTATTGGGTGTATCAAGTGAATCTGAAGTGAATGAAATTAGTCAGTTATTTTACGACTTCGTGGATGGCTGTCTATCTATTCCTATCAACTTGCCTGGCTTTGCCTATTACAATGCAATGAAGGCAAGGAAGCAAATCATAAGCAAAATTAAGAAGAAAATAAAGATGCACAAATCAGGCGTAGCAATGGAAACGAGCGGGCAGGAAGTGCTTGCAAGACTATTAGAAGAACAAAAGTACTTATCGGATGAGGCAGTTGAAGATTTCATTATCAATCTTCTTTTTGCTGGAAACGAAACCACTTCTAAAACGATGCTTTTCGCAGTCTATTACCTAACCCACTCACCAAAAGCAATGAAGCAACTCCTGGATGAACAAGATGCTTTAAGAAATGAGTATGGAGATAATACAATCACATGGCAGGATTACAAATCAATGCCCTTTACCCAGTGTGTTATTGATGAGACGCTTCGACTCGGAGGAATTGCAATTTGGTTGATGAGGGAGACGAAAGAAGAGATCAAATACTCAGATTACGAGATTCCAAAGGGAACCTTTGTTGTTCCATTTCTTTGTGCTGTACATTTGGACGAGAATATATATGATGGAGCTTTAACTTTTAACCCTTGGAGATGGATGGAGCTTAAAAATCAGGAAATGAGAAATTGGAGGAATAGCCCATTCTTTGCTCCATTTGGAGGAGGTGGTAGGTTGTGTCCGGGAGCAGAATTGGCCCGTCTCCAAATTGCTTTATTTCTCCACCACTTTGTTACCAAGTACAGGTGGACACAAATTAAAGCAGATAGAATGTCTTTCTTTCCCTCTGCTCGGCTAGTCAACGGCTTCCAAATTCACTTGGAAAAATGGGAACACTGA | 1470 | 39.86 | MWEPSLVVWTFFILTLLSITFLSKILKNGKYIGQDDQSQRRYKFPPGRRSWPVIGDSFHWYSAIASSHPSKYVEEQAKRYGKIFSCRIFGKCTVVSIDPKFNRYVMQNEGTLFQSSYPKSFRDLVGLNGVITVQGEQQRKLHAIASNFMRINKLNFSFLKDIQTIIIHSLTTFHDGHHQVISLQDACRKIAINLMVSQLLGVSSESEVNEISQLFYDFVDGCLSIPINLPGFAYYNAMKARKQIISKIKKKIKMHKSGVAMETSGQEVLARLLEEQKYLSDEAVEDFIINLLFAGNETTSKTMLFAVYYLTHSPKAMKQLLDEQDALRNEYGDNTITWQDYKSMPFTQCVIDETLRLGGIAIWLMRETKEEIKYSDYEIPKGTFVVPFLCAVHLDENIYDGALTFNPWRWMELKNQEMRNWRNSPFFAPFGGGGRLCPGAELARLQIALFLHHFVTKYRWTQIKADRMSFFPSARLVNGFQIHLEKWEH | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4711518 | 4720960 | + | ClG42_06g0039600.10 | Clacu06g0396 | 251044 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g0396 | 489 | Pfam | Cytochrome P450 | 45 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 430 | 439 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu06g0396 | 489 | CDD | CYP90-like | 78 | 486 | - | - | |
| Clacu06g0396 | 489 | SUPERFAMILY | Cytochrome P450 | 39 | 484 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PANTHER | CYTOCHROME P450 26 | 43 | 458 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Clacu06g0396 | 489 | PRINTS | P450 superfamily signature | 437 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | P450 superfamily signature | 428 | 437 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | P450 superfamily signature | 294 | 311 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | E-class P450 group IV signature | 344 | 360 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | E-class P450 group IV signature | 393 | 411 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | E-class P450 group IV signature | 285 | 311 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | E-class P450 group IV signature | 421 | 437 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | E-class P450 group IV signature | 71 | 94 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | PRINTS | E-class P450 group IV signature | 437 | 455 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu06g0396 | 489 | Gene3D | Cytochrome P450 | 34 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g0396 | Clacu-Chr6:4711518 | Clacu07g0913 | Clacu-Chr7:22881363 | 8.30E-81 | dispersed | |
| Clacu06g0396 | Clacu-Chr6:4711518 | Clacu09g0062 | Clacu-Chr9:628159 | 1.40E-80 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g0396 | - | - | - | 0.0 |