Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0401 ATGCGACTGGGAAAGTACGAGCTTGGAAAGACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCATCAACCCTTTGCTGTCAAAGAAGTTGATAAGACCAAGGTTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACATGGTTCTCGAGTACGTTAACGGCGAAGAACTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGACGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCATAGAGATCTCAAGTTGGAGAACATACTTGTTGATACCATGGGAAATGTTAAGATAACTGACTTTGGCTTGAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCAGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTTACAGGATCTCTTCCTTTCGATGACAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATCATCCAGCCTACCTTCATGACGAAGATGAAGATATATACACTAGTGAAGCTATGGCCTTCCCAATGCATCAAGTGAGTTCAGAGTCTTCCAATACTATAAATGCTTTTCAACTGATTGGAATGTCCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTGCAACCAATCACTCTACAAAAGAAGATATACTCAACCGGATGGATGATCTTGTAACCAATATGGGGTTTCTTGTCCAGAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCGGTATCGGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATATAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG 1281 39.73 MRLGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKTKVIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGEELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDTMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYHPAYLHDEDEDIYTSEAMAFPMHQVSSESSNTINAFQLIGMSSCLDLSGFFEKEDISERKIRFATNHSTKEDILNRMDDLVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSYRQLCNILSSDLGVPSNQDSVMA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4781208 4790646 + ClG42_06g0040100.10 Clacu06g0401 251049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0401 426 FunFam Non-specific serine/threonine protein kinase 295 418 - -
Clacu06g0401 426 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Clacu06g0401 426 Pfam NAF domain 296 355 IPR004041 GO:0007165(InterPro)
Clacu06g0401 426 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0401 426 Gene3D Transferase(Phosphotransferase) domain 1 86 284 - -
Clacu06g0401 426 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Clacu06g0401 426 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165(InterPro)
Clacu06g0401 426 CDD CIPK_C 299 415 - -
Clacu06g0401 426 Gene3D Kinase associated domain 1, KA1 292 417 - -
Clacu06g0401 426 FunFam Non-specific serine/threonine protein kinase 1 300 - -
Clacu06g0401 426 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Clacu06g0401 426 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0401 426 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Clacu06g0401 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0401 426 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0401 426 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 405 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0401 Clacu-Chr6:4781208 Clacu06g1315 Clacu-Chr6:24121893 3.20E-105 dispersed
Clacu06g0401 Clacu-Chr6:4781208 Clacu06g0402 Clacu-Chr6:4796962 9.10E-100 tandem
Clacu05g0800 Clacu-Chr5:6855902 Clacu06g0401 Clacu-Chr6:4781208 3.80E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73624 PF00069 Pkinase 6.50E-72 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0401 K07198 - csv:101206030 716.072