Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0402 ATGCGAATGGGAAAATACGAGCTGGGAAGAACAATCGGGCATGGCAGTTTCAGTAAGGTCAAATTTGCTATAAACCTTGAAACTGGCCAACCTTTTGCTATCAAGGTTCTCGAGAAGACCAAAATCATCAATCTCAATTTCACGAATCAGGTGTTGGCCAGTAAAAGCAAAATTTATATGGTTCTTGAGTATGTGAATGGCGGAGAATTGTATAATAGAATCGCATTGAAAGGGAAGGTATCAGAAGACGAAGGCAGAAAAATCTTCCAACAGTTAATTGATGGTGTGAGTTACTGCCATAGGAAAGGTGTTTACCATAGGGATCTCAAGCTAGAGAACATACTTGTGGATGCTAGAGGAAATATCAAGATATCTGATTTTGGATTAAGTGCATTACAAGAGCATTTAAGGATCTTGAAAGGAGAAACTCAATTACCAATGTGGCTGTCACAAGGGGCCCAAAAGTTAATTAGACGGATTCTTGATCCTAACCCTATTTTTAGGGCAACTATGGAATCCATCAAAATAGACCATTGGTTTAGTAAGGACTATCATCCACCCAACTTTTACGATGAAGATCAAGAGGATATATACGTGGCCATCTCAACGAATCAAGAGGACATTTCGGAAAGGAAGATAAGATTTACAATCAATCACTCTACAAAAGAAGATACCATTAAGCGAATGGAGGATCTTGTAACAGATATGGGGTTTCTTGTCCAAAAGAAGGAAGGAAGGTTGAAAGTAATTAGAGAGGAAAGGGGTGAGAATGGTGTGGGCAGCATATTTTCAATATCAGCTCAGATCGTCGCAACTTACGCTTCCGGCGAAATGGCCAGCGGCTTGCAGATGAGTCCTCAGTTAGAGCAGATCCATGGGGAAATTCGTGACAATTTTCGGGCTCTTTCAAATGGGTTCCAAAGACTGGATAAGATCAAAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGGGAATGTAAAAGATTAATAAAAGATTTTGACCGTGAAATCAAGGAGGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAATGATGAGAAGCAATCAATGATCAAGGAGCTGAATTCATTTGTTGCATTGAGGAAAACGTATATGAATAGTCTTGGTAATAAAAGGGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACAGCTGATGATAATGTTCGGATGGCCTCATCAATGACAAATCAAGAACTTATAGATGCTGGGAAGAAGACAATGGATGAAACCGATCAGGCTATTGAACGCACGCAAAAGGTGGTTGAACAAACTATTGAAGTGGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGAGCAAATGGGCCGTATAGTAAATGAGCTTGACACAATTAATTTTTCAATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGATAAATGCATCATGCTGTTTCTGTTCCTAATTGTCTGTGGAGTAATAGCCATTATTGTAGTTAAGATTGTGAACCCCAACAACAAAAACATCAGGGATATTCCTGGATTGGCACCTCCAGCTCCTGCAAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCAAGTAA 1638 40.11 MRMGKYELGRTIGHGSFSKVKFAINLETGQPFAIKVLEKTKIINLNFTNQVLASKSKIYMVLEYVNGGELYNRIALKGKVSEDEGRKIFQQLIDGVSYCHRKGVYHRDLKLENILVDARGNIKISDFGLSALQEHLRILKGETQLPMWLSQGAQKLIRRILDPNPIFRATMESIKIDHWFSKDYHPPNFYDEDQEDIYVAISTNQEDISERKIRFTINHSTKEDTIKRMEDLVTDMGFLVQKKEGRLKVIREERGENGVGSIFSISAQIVATYASGEMASGLQMSPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRLIKDFDREIKEEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEGGVSEPTADDNVRMASSMTNQELIDAGKKTMDETDQAIERTQKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPAPARRLLYLRTPEHFK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4796962 4815050 + ClG42_06g0040200.10 Clacu06g0402 251050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0402 545 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Clacu06g0402 545 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 421 483 IPR000727 -
Clacu06g0402 545 SMART tSNARE_6 416 483 IPR000727 -
Clacu06g0402 545 SUPERFAMILY Protein kinase-like (PK-like) 2 191 IPR011009 -
Clacu06g0402 545 FunFam novel plant SNARE 11 412 491 - -
Clacu06g0402 545 CDD SNARE_SNAP25N_23N_29N_SEC9N 420 482 IPR044766 GO:0005484(InterPro)|GO:0031201(InterPro)
Clacu06g0402 545 Gene3D - 412 491 - -
Clacu06g0402 545 Gene3D Transferase(Phosphotransferase) domain 1 1 135 - -
Clacu06g0402 545 Gene3D Transferase(Phosphotransferase) domain 1 136 257 - -
Clacu06g0402 545 ProSiteProfiles Protein kinase domain profile. 6 239 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0402 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0402 545 SUPERFAMILY SNARE fusion complex 411 484 - -
Clacu06g0402 545 Pfam Protein kinase domain 50 133 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0402 545 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 137 271 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu06g0402 545 SMART serkin_6 6 180 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0402 545 Coils Coil 322 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0402 K08494 - - csv:101206271 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0402 Clacu-Chr6:4796962 Clacu10g0211 Clacu-Chr10:2529346 1.10E-86 dispersed
Clacu06g0399 Clacu-Chr6:4751612 Clacu06g0402 Clacu-Chr6:4796962 1.00E-17 proximal
Clacu06g0401 Clacu-Chr6:4781208 Clacu06g0402 Clacu-Chr6:4796962 9.10E-100 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g255 Blo01g00024 Blo12g00374 Bda03g00835 . Bpe04g00791 . Bma04g00734 Bma05g00986 . . . . . . . . . . . . . . . . Cla06g00393 Cam06g0415 Cec06g0423 Cco06g0423 Clacu06g0402 Cmu06g0402 Cre06g1181 Cone14ag0681 Cone15ag0693 . . . . . . . . . . . . . . . . . . . . . Cpe12g00349 . Bhi12g01996 . . . Hepe03g0009 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73625 PF00069 Pkinase 2.90E-30 CL0016 Clacu PK