Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0403 ATGGCTCCTGATCTAAACACGACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGGATCCTGGTTGGGGTGTTTATTGTAATAGTCCTTGTAGTGTTATCAATATGTGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGCATGCTTCCTCTCAACCGTATTTCCATTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTACACCAATCCAACAGGGTTCCCTCCCCCATGATGGATTCGACACAGAATCAGAAAAAGTTCTTCTATATTCAAACAAGGCATACAATTACAGCATATCAGGCTCAGTTGATCACACAGAGATATATGCTATTGGCTCTGGAGAAGGGAGCAAGGAAGCAAGTGTTTTGCAAAGACCCTCAGATTCAATACCATCGAATCCTTCGCCACTGGCTGGTCTGCCAGAGTTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTTATCAATGGGACACCTGTAGCTGTCAAAAAGCTTTTAAGTTTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCATTTGGGCATGTGCGGCATAAGAACTTAGTACGGCTCCTGGGATACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTACGTGGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCAAGAATCAAAATTCTCCTTGGTACTGCTAAGGCACTGGCATATTTGCATGAGGCAATCGAGCCAAAAATCGTCCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAACTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGCCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAATGAGAAGAGCGATGTTTATAGTTTTGGAGTGGTACTTTTGGAAGCAATTACTGGAAGAGACCCTGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGGAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAGAGAAAGCCATCAATTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCCCGCATGCTCGAGTCTGAAGAATATCCAATTCCTCGACAGGACCGGAGACCCAGAAAAAGCAATGCCATTGCGACCAAAATGGAAACTGAGAAACAGGAAAGAGGACCCAGACGACACAGATAA 1443 43.73 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLNRISIASKEIKEIGVDHVTPIQQGSLPHDGFDTESEKVLLYSNKAYNYSISGSVDHTEIYAIGSGEGSKEASVLQRPSDSIPSNPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLSLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIPRQDRRPRKSNAIATKMETEKQERGPRRHR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4823775 4826521 + ClG42_06g0040300.10 Clacu06g0403 251051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0403 480 ProSiteProfiles Protein kinase domain profile. 173 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0403 480 CDD STKc_IRAK 179 444 - -
Clacu06g0403 480 PANTHER OS01G0323000 PROTEIN 1 470 IPR052232 -
Clacu06g0403 480 MobiDBLite consensus disorder prediction 447 480 - -
Clacu06g0403 480 SUPERFAMILY Protein kinase-like (PK-like) 157 454 IPR011009 -
Clacu06g0403 480 ProSitePatterns Protein kinases ATP-binding region signature. 179 202 IPR017441 GO:0005524(InterPro)
Clacu06g0403 480 MobiDBLite consensus disorder prediction 430 480 - -
Clacu06g0403 480 FunFam Putative receptor-like serine/threonine-protein kinase 248 459 - -
Clacu06g0403 480 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0403 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0403 480 Gene3D Phosphorylase Kinase; domain 1 153 247 - -
Clacu06g0403 480 FunFam serine/threonine-protein kinase PBS1-like 149 247 - -
Clacu06g0403 480 SMART serkin_6 173 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0403 480 Gene3D Transferase(Phosphotransferase) domain 1 248 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1887 Clacu-Chr2:32381446 Clacu06g0403 Clacu-Chr6:4823775 1.20E-145 dispersed
Clacu06g0403 Clacu-Chr6:4823775 Clacu09g2270 Clacu-Chr9:37442004 8.60E-155 dispersed
Clacu11g1691 Clacu-Chr11:28156176 Clacu06g0403 Clacu-Chr6:4823775 2.60E-25 dispersed
Clacu02g1512 Clacu-Chr2:28586415 Clacu06g0403 Clacu-Chr6:4823775 2.20E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73626 PF00069 Pkinase 4.20E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0403 - - - 0.0