Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g0403 | ATGGCTCCTGATCTAAACACGACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGGATCCTGGTTGGGGTGTTTATTGTAATAGTCCTTGTAGTGTTATCAATATGTGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGCATGCTTCCTCTCAACCGTATTTCCATTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTACACCAATCCAACAGGGTTCCCTCCCCCATGATGGATTCGACACAGAATCAGAAAAAGTTCTTCTATATTCAAACAAGGCATACAATTACAGCATATCAGGCTCAGTTGATCACACAGAGATATATGCTATTGGCTCTGGAGAAGGGAGCAAGGAAGCAAGTGTTTTGCAAAGACCCTCAGATTCAATACCATCGAATCCTTCGCCACTGGCTGGTCTGCCAGAGTTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTTATCAATGGGACACCTGTAGCTGTCAAAAAGCTTTTAAGTTTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCATTTGGGCATGTGCGGCATAAGAACTTAGTACGGCTCCTGGGATACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTACGTGGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCAAGAATCAAAATTCTCCTTGGTACTGCTAAGGCACTGGCATATTTGCATGAGGCAATCGAGCCAAAAATCGTCCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAACTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGCCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAATGAGAAGAGCGATGTTTATAGTTTTGGAGTGGTACTTTTGGAAGCAATTACTGGAAGAGACCCTGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGGAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAGAGAAAGCCATCAATTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCCCGCATGCTCGAGTCTGAAGAATATCCAATTCCTCGACAGGACCGGAGACCCAGAAAAAGCAATGCCATTGCGACCAAAATGGAAACTGAGAAACAGGAAAGAGGACCCAGACGACACAGATAA | 1443 | 43.73 | MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLNRISIASKEIKEIGVDHVTPIQQGSLPHDGFDTESEKVLLYSNKAYNYSISGSVDHTEIYAIGSGEGSKEASVLQRPSDSIPSNPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLSLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIPRQDRRPRKSNAIATKMETEKQERGPRRHR | 480 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4823775 | 4826521 | + | ClG42_06g0040300.10 | Clacu06g0403 | 251051 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g0403 | 480 | ProSiteProfiles | Protein kinase domain profile. | 173 | 449 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu06g0403 | 480 | CDD | STKc_IRAK | 179 | 444 | - | - | |
Clacu06g0403 | 480 | PANTHER | OS01G0323000 PROTEIN | 1 | 470 | IPR052232 | - | |
Clacu06g0403 | 480 | MobiDBLite | consensus disorder prediction | 447 | 480 | - | - | |
Clacu06g0403 | 480 | SUPERFAMILY | Protein kinase-like (PK-like) | 157 | 454 | IPR011009 | - | |
Clacu06g0403 | 480 | ProSitePatterns | Protein kinases ATP-binding region signature. | 179 | 202 | IPR017441 | GO:0005524(InterPro) | |
Clacu06g0403 | 480 | MobiDBLite | consensus disorder prediction | 430 | 480 | - | - | |
Clacu06g0403 | 480 | FunFam | Putative receptor-like serine/threonine-protein kinase | 248 | 459 | - | - | |
Clacu06g0403 | 480 | Pfam | Protein kinase domain | 175 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu06g0403 | 480 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 294 | 306 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu06g0403 | 480 | Gene3D | Phosphorylase Kinase; domain 1 | 153 | 247 | - | - | |
Clacu06g0403 | 480 | FunFam | serine/threonine-protein kinase PBS1-like | 149 | 247 | - | - | |
Clacu06g0403 | 480 | SMART | serkin_6 | 173 | 443 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu06g0403 | 480 | Gene3D | Transferase(Phosphotransferase) domain 1 | 248 | 457 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1887 | Clacu-Chr2:32381446 | Clacu06g0403 | Clacu-Chr6:4823775 | 1.20E-145 | dispersed | |
Clacu06g0403 | Clacu-Chr6:4823775 | Clacu09g2270 | Clacu-Chr9:37442004 | 8.60E-155 | dispersed | |
Clacu11g1691 | Clacu-Chr11:28156176 | Clacu06g0403 | Clacu-Chr6:4823775 | 2.60E-25 | dispersed | |
Clacu02g1512 | Clacu-Chr2:28586415 | Clacu06g0403 | Clacu-Chr6:4823775 | 2.20E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73626 | PF00069 | Pkinase | 4.20E-48 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g0403 | - | - | - | 0.0 |