Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0409 ATGGCCAGCAATAAGCCTATTGCACCAAAGGAAGAGGTCTTTGATTTCAGGTTGCCTCCTGATCGGATGTACTCGAGGCATGTTGGGGACACTGGTGCAAGCTCATCTGGAAGTAATATAAGGGCATTCTTCATAGATATGGGATTCCTGCCATCCCTTGTTGATAAAGTGATTGAAGAAAATGGTGAAGATGATGTAGAATTGTTATTAAATACCCTGACTACATTTTCGGCAGAACAAAAATCAACTCCTGAGTCATCAGATTCTCTTGATGGCTTACGAAGTGGTAAAAAGGGCAGTAATCCTCCACATTTTTCTAAAATCTGTCATAAGCAGGCTGTGGAGTCCCTACAGACGTCAAAATCTGAATCATCAGATTCTCTAGATAGCTTATTTGATGACAAGGATGCACACAATGAAATCTCTTCAGTTGTTATACCAAAGGAGGAGGCTGATGATTATTATGATGCTAATGATACCAACAAAGCATCCTTATTAATGATGAACTTTACTGTCGATGAAGTTGACTTTGCGATTGATAAGCTTGGTGGAGATGCTCCCATTAATGAATTGGTGGATTTTATCATCGCTGCACAGATTGCTGAAAATTTGGAGAAGGAAACAGATGATGTTACATTCTGTAGAAATGAATTGAAAAAGGAGGAAAATGATGAAACCTTGTTTGTGACGATGGAGAAAACACTTCGCTTGCTTGAAATGGGCTTCTCTGAGAATGAGGTTTCTTTGGCAATTGAAAAGTTTGGTTCGGAAACTCCAGTTGCGGAGCTTGCCGATTCCATTGTTACAGGTCGAATTGCTGGTGACTACCCTGGGAATGTTAAGTGTTCCCCAAACTCGTTTGGCATTGGTGGCTTACATACTTCAGAAGATTATATGACTAAAGTTAAAGCTGAAGAATCCAGTTCCGCTGGTGTTTCTCTGCCAAGAAATGTTAACATTGAGGAAATACTGAAAGGGAAAAGGCCAAAAGAAGAAAATATGGATGACCTTCTGAATCCTATTCCTCGTTTTGATGTTAATAAACATAAAGGGAAAAGGCCAAAGCAAGAATATGCCGATGACTTGAGTTCTCTATATGGTCCTGGATGGGTGGAATCAAAAGTCAATCCAAACATCACCAGATTTGACATTCCCCCACCTTCAAAACTAAATCTCTCAAGAAGTCTTGATAAGTTGGTGGCTAAGCCTCCATCCCCACCTTTAAGATTAAATCCTTCTAGAAGTCTTGATAAGATGGTGGCTAAACCTCCATTTTTCTTGTATGGAAATGTTTTGGATATAGCTCGCGATTCTTGGGAAAAAGTTTCCAAGTTCCTATATGCCATTCAGCCTGAATTCGTGGACACTCGGTCCTTCTCAGCGTTGAGTAGAACGGAAGGCTACGTGCACAATCTTCCATGTGAGAACAGGTCTCACATCCTTCCGATGCCTCCAATGACCGTCCAAGATGCGACACGTACAAAAAAATGGTGGCCATCTTGGGATACAAGGAAGTATTTGAGCTGCATCAATTCTGAAACTAGAGGAGTATCTCAGCTGTGTGATGGGCTGACAAAGACACTGACCGATTCTCACGGCCGACTCTCATCTCAACAGCAGAGAGATATTCTTCATCATTGCATAGCTTTGAACCTTATTTGGGTCAGCCAGTCCAAACTGGCTCCTATAGAGCCTGAACAGCTAGAATGCGTGCTTGGCTACCCGGTAAATCACACCCAAGATGCTGAAAGTAGCTCAATGGAAAGGCTTCAATATCTCAAGTATTGTTTTCAGACAGACACTTTGGGTTATCATCTATCTGTTTTGAAGCCTATGTTCCCAGAAGGGTTGATTGTGTTGTCCATTTTCAGTGGAATTGGTGGGGCGGAAATTGCTTTGCACCGTCTTGGCATTCGTTTGAAAGTCGTGATCTCGGTTGAGAGTTCAGCAGCAAAGAGGAGGATTTTGAAGAAATGGTGGCATAGTAGTGGACAAACTGGGGAACTGGAGCAGATAGAGGACATACAGAAACTAACAAGCAACAAGATTCACAATTTGATTAAGAAATATGGTGGTTTTGATTTGGTCATTTGTCAGAATCCTTGTTCTCGTTGTTTGTCATCTTCAAAACTGAATCAGAGTGGAGACGCTGAGGGTATAGCAAGTTTTGATTTCTCTATATTCTATGAGTTTGTCCGTGTTTTGCAGGGTGTAAGGAATACCATGGAAAGAAAGAAGTGA 2241 41.41 MASNKPIAPKEEVFDFRLPPDRMYSRHVGDTGASSSGSNIRAFFIDMGFLPSLVDKVIEENGEDDVELLLNTLTTFSAEQKSTPESSDSLDGLRSGKKGSNPPHFSKICHKQAVESLQTSKSESSDSLDSLFDDKDAHNEISSVVIPKEEADDYYDANDTNKASLLMMNFTVDEVDFAIDKLGGDAPINELVDFIIAAQIAENLEKETDDVTFCRNELKKEENDETLFVTMEKTLRLLEMGFSENEVSLAIEKFGSETPVAELADSIVTGRIAGDYPGNVKCSPNSFGIGGLHTSEDYMTKVKAEESSSAGVSLPRNVNIEEILKGKRPKEENMDDLLNPIPRFDVNKHKGKRPKQEYADDLSSLYGPGWVESKVNPNITRFDIPPPSKLNLSRSLDKLVAKPPSPPLRLNPSRSLDKMVAKPPFFLYGNVLDIARDSWEKVSKFLYAIQPEFVDTRSFSALSRTEGYVHNLPCENRSHILPMPPMTVQDATRTKKWWPSWDTRKYLSCINSETRGVSQLCDGLTKTLTDSHGRLSSQQQRDILHHCIALNLIWVSQSKLAPIEPEQLECVLGYPVNHTQDAESSSMERLQYLKYCFQTDTLGYHLSVLKPMFPEGLIVLSIFSGIGGAEIALHRLGIRLKVVISVESSAAKRRILKKWWHSSGQTGELEQIEDIQKLTSNKIHNLIKKYGGFDLVICQNPCSRCLSSSKLNQSGDAEGIASFDFSIFYEFVRVLQGVRNTMERKK 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4900002 4905903 + ClG42_06g0040900.10 Clacu06g0409 251057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0409 746 PANTHER DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED 30 209 - GO:0005634(PANTHER)|GO:0006306(PANTHER)|GO:0016458(PANTHER)
Clacu06g0409 746 MobiDBLite consensus disorder prediction 78 105 - -
Clacu06g0409 746 MobiDBLite consensus disorder prediction 334 357 - -
Clacu06g0409 746 MobiDBLite consensus disorder prediction 78 94 - -
Clacu06g0409 746 Coils Coil 204 224 - -
Clacu06g0409 746 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 412 745 IPR030380 -
Clacu06g0409 746 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 612 703 IPR029063 -
Clacu06g0409 746 Gene3D Vaccinia Virus protein VP39 610 746 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0409 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0409 Clacu-Chr6:4900002 Clacu10g1393 Clacu-Chr10:27056521 7.70E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g226 . Blo12g00378 Bda03g00829 . Bpe04g00786 . Bma04g00728 . . . . . . . . . . . . . . . . . Cla06g00401 Cam06g0423 Cec06g0430 Cco06g0430 Clacu06g0409 Cmu06g0409 Cre06g1189 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01980 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006515 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 38