Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0411 ATGGTAGCTGAAGCTGAGATCAAATGCCCCAAAACCGTTCCTCTCGTGAAAATCAACTATCATCTTTGCGTAACCGATGATCGCGATCTTGAGATCCATTTGCCGCACCCTTCTTCCTCACCTGTTTTTCCCGAGGCAGTTAGTTGTTCAGATATTGTTGAAGATGTGCATATAAAATCAACTGCCATAGGTTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGAGATTCTATGGATGATGAACATGTCTGCATTGATGACCTGTCTGCCCACGTTAGATCTATGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCTTTGAAAGATTTGGAGAACTCTCATCGCAAAGCATTTCAATTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCGTGCGGGACAACTGCGTTGACTGCGTTGGTCCTTGGGAGGCATTTGCTTGTTGCAAATGCCGGTGATTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTCCCAATGTCTGAAGATCACAGGCCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGTTTCGTAGATGATGGATATGTTAATGGCTATATTTCAGTAACCAGGACCTTGGGGGATTGGGATCTGAAATTGCTAAATGGCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATTTTAACAGGCGATGATGAGTTCTTGATTCTCGGCTGTGATGGGATTTGGGACGTAATGTCAAGCCAATATGCTGTCAGTCTCGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCGAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCTCCGAATTGCGTTCCCCAGCAGCGAATATGCAAGTCGTGTAATCTGACCGAAGAGGCTACAAATAGATTGAGGAGCTTGTTAGAAGGTAACTGA 1119 44.59 MVAEAEIKCPKTVPLVKINYHLCVTDDRDLEIHLPHPSSSPVFPEAVSCSDIVEDVHIKSTAIGFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHVRSMFKCSMPNGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKMQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLLNGSSSPLIAEPQVEHVILTGDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVQEALRLNTSDNLTAIVICFSSPNCVPQQRICKSCNLTEEATNRLRSLLEGN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4916388 4920674 + ClG42_06g0041100.10 Clacu06g0411 251059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0411 372 PANTHER PROTEIN PHOSPHATASE 2C 60 340 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Clacu06g0411 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Clacu06g0411 372 CDD PP2Cc 69 340 IPR001932 -
Clacu06g0411 372 SUPERFAMILY PP2C-like 59 342 IPR036457 -
Clacu06g0411 372 Gene3D - 52 344 IPR036457 -
Clacu06g0411 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169(InterPro)
Clacu06g0411 372 SMART PP2C_4 60 338 IPR001932 -
Clacu06g0411 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Clacu06g0411 372 FunFam Probable protein phosphatase 2C 22 53 343 - -
Clacu06g0411 372 SMART PP2C_SIG_2 85 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0411 Clacu-Chr6:4916388 Clacu11g2066 Clacu-Chr11:31577997 4.40E-82 dispersed
Clacu06g0411 Clacu-Chr6:4916388 Clacu09g0481 Clacu-Chr9:4141035 2.40E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47853 PF00481 PP2C 1.70E-64 CL0238 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0411 K14803 - csv:101207477 691.804