Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0414 ATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGGTATTCGTATCCTCCTCTTTCTTCATCGCGGTTTTCAGCTTCGAGTTGGAACTGGAACCGCTTTTCTCCCAACCAACGGCCTAAAGTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCGCAGACCAAAGGGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAGGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGTAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAAAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACCGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGAGTGGATAA 1176 44.64 MSSSAHQPCGLNSRYSYPPLSSSRFSASSWNWNRFSPNQRPKVLPLVSAAASSPSPISNAQTKGRLKLKQLFKEAYERCCTAPMDGISFTLEDFHAALANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRHVEEVGIYPGLEEEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISAKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQAETMARAGLLGFQLESG 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4935298 4938669 - ClG42_06g0041400.10 Clacu06g0414 251062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0414 391 Gene3D - 91 188 IPR012340 -
Clacu06g0414 391 Gene3D - 266 345 IPR012340 -
Clacu06g0414 391 CDD S1_RPS1_repeat_hs4 273 341 - -
Clacu06g0414 391 ProSiteProfiles S1 domain profile. 196 260 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 SMART S1_6 194 260 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 SMART S1_6 271 341 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 SMART S1_6 106 178 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 SUPERFAMILY Nucleic acid-binding proteins 266 347 IPR012340 -
Clacu06g0414 391 SUPERFAMILY Nucleic acid-binding proteins 106 204 IPR012340 -
Clacu06g0414 391 Gene3D - 189 265 IPR012340 -
Clacu06g0414 391 ProSiteProfiles S1 domain profile. 108 178 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 PRINTS Ribosomal protein S1 signature 217 234 IPR035104 -
Clacu06g0414 391 PRINTS Ribosomal protein S1 signature 108 126 IPR035104 -
Clacu06g0414 391 PRINTS Ribosomal protein S1 signature 199 215 IPR035104 -
Clacu06g0414 391 PRINTS Ribosomal protein S1 signature 126 140 IPR035104 -
Clacu06g0414 391 FunFam RNA-binding transcriptional accessory protein 258 345 - -
Clacu06g0414 391 FunFam 30S ribosomal protein S1 92 189 - -
Clacu06g0414 391 Pfam S1 RNA binding domain 270 341 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 Pfam S1 RNA binding domain 195 258 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 ProSiteProfiles S1 domain profile. 273 341 IPR003029 GO:0003676(InterPro)
Clacu06g0414 391 PANTHER 30S RIBOSOMAL PROTEIN S1 71 378 IPR050437 GO:0003729(PANTHER)|GO:0003735(PANTHER)|GO:0006412(PANTHER)|GO:0009570(PANTHER)
Clacu06g0414 391 CDD S1_RPS1_repeat_ec2_hs2 196 258 - -
Clacu06g0414 391 SUPERFAMILY Nucleic acid-binding proteins 196 262 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0414 K02945 - - vvi:100265325 508.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0414 Clacu-Chr6:4935298 Clacu08g0409 Clacu-Chr8:5512895 1.80E-118 dispersed
Clacu05g0781 Clacu-Chr5:6660202 Clacu06g0414 Clacu-Chr6:4935298 5.10E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013392 0 1 0 0 0 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 1 0 1 1 11 0 27