Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0427 ATGGCTAAGTATCTGCTTTTCCCTCTTTGTCTAATAATGTTTGAGTTTATTGCACTCGCTTCAGCGAACATGCAAGTTTCATATGGAGGAGGATACCAAAACCAGCCAACGTTTGGCACACCACCTATCTGCCCGGAGGCAGAAGCCATCATCTTCTCTTGGATCCAAACCGCCATTGCCGAGGACCACCGAATGGCAGCATCTTTGCTTCGACTCCATTTCCACGACTGCTTTGGATGTGATGCTTCTGTTTTGCTGGATGACAATGAGAACTTTGTAGGTGAAAAGACAGCAGCTCCAAATGTGAACTCACTGAGGGGATTTGAAGTGATTGATGCTATAAAATCTGATATTGAATCTGTTTGCCCACAGACAGTTTCATGTGCTGACATTCTAGCAATTGCAGCCAGAGACTCTGTTGGACTATCTGGAGGGCCCTTTTGGAAAGTGGAATTTGGAAGACGCGATAGCATAAGTGCTAGCAAATCAGCAGCACTTAACAACATTCCGGGCCCGAACTCCACTGTAGCCACCCTAGTTTCTAAGTTCCAGAACCTTGGTCTTTCTCTCAGAGATATGGTTGCTCTCTCAGGGGGGCACACACTTGGAAAAGCAAGATGTGTTACATTCAGTTCTAGGCTGCAAGCCAACAGCGGCAGTCCAAATGAAGGAGCAAACCAAGAGTTTATCGAGTCACTAAAACAGCTCTGCTCGATATCTGGTAGTAGCTCGACACTGGCACAGCTCGATGTTGTAACCCCAGCAACATTTGACAACCAATATTACATTAATCTTCTATCTGGAGAGGGGTTACTCCAGTCTGATCATGTTCTTGTGACTGGGGACTACCAGACAAGGGAGATAGTTGAAACCTACGCCGCCGACCCAGTTGCCTTCTTTGAAGATTTCAAACAGTCGATGGTGAAGATGGGAAGCCTCAAACCACCTGCTGAAACACAGACCGTGATCCGAACTAATTGTCGAACTACAAACTCCCTTGAAGCATTGCTCATCTTATCTGTGGTTTGTGTACCTTACAAAGCTATTCTTCTCTGCCTTGGAACTTCAAGGCAGCAGGAGCCTAATATCTTCATTTCATAA 1101 45.78 MAKYLLFPLCLIMFEFIALASANMQVSYGGGYQNQPTFGTPPICPEAEAIIFSWIQTAIAEDHRMAASLLRLHFHDCFGCDASVLLDDNENFVGEKTAAPNVNSLRGFEVIDAIKSDIESVCPQTVSCADILAIAARDSVGLSGGPFWKVEFGRRDSISASKSAALNNIPGPNSTVATLVSKFQNLGLSLRDMVALSGGHTLGKARCVTFSSRLQANSGSPNEGANQEFIESLKQLCSISGSSSTLAQLDVVTPATFDNQYYINLLSGEGLLQSDHVLVTGDYQTREIVETYAADPVAFFEDFKQSMVKMGSLKPPAETQTVIRTNCRTTNSLEALLILSVVCVPYKAILLCLGTSRQQEPNIFIS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5056681 5058448 - ClG42_06g0042700.10 Clacu06g0427 251075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0427 366 Gene3D - 44 331 - -
Clacu06g0427 366 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601(InterPro)
Clacu06g0427 366 Pfam Peroxidase 54 295 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Clacu06g0427 366 CDD secretory_peroxidase 44 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu06g0427 366 FunFam Peroxidase 170 310 - -
Clacu06g0427 366 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 ProSiteProfiles Plant heme peroxidase family profile. 33 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 SUPERFAMILY Heme-dependent peroxidases 43 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 Gene3D Peroxidase, domain 2 170 311 - -
Clacu06g0427 366 PANTHER PEROXIDASE 72-RELATED 42 329 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 FunFam Peroxidase 41 184 - -
Clacu06g0427 366 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0427 366 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0427 Clacu-Chr6:5056681 Clacu09g1264 Clacu-Chr9:13352646 7.40E-74 dispersed
Clacu06g0427 Clacu-Chr6:5056681 Clacu07g0875 Clacu-Chr7:21869346 2.50E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0427 K00430 - csv:101205763 587.415