Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0428 ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCGGACGACCCTTCCGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTACATCAGCCGGCGCCGCTGCCTTCGCCTCACCCCAACCGCCGCTTGTTTTCCCACAGCCGCAATTATTCCGAAACCACCATCAGCAATATACGTACGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGTGTTTGATCCCGTGTTTCATAGTTTTGGTGGTGATGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA 984 48.27 MEEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGATSAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRVFDPVFHSFGGDERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5063751 5065173 - ClG42_06g0042800.10 Clacu06g0428 251076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0428 327 MobiDBLite consensus disorder prediction 1 26 - -
Clacu06g0428 327 SUPERFAMILY WRKY DNA-binding domain 154 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g0428 327 MobiDBLite consensus disorder prediction 94 117 - -
Clacu06g0428 327 MobiDBLite consensus disorder prediction 35 54 - -
Clacu06g0428 327 Gene3D WRKY domain 146 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g0428 327 FunFam WRKY transcription factor 57 148 222 - -
Clacu06g0428 327 MobiDBLite consensus disorder prediction 68 150 - -
Clacu06g0428 327 SMART WRKY_cls 162 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g0428 327 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 230 IPR044810 GO:0003700(InterPro)
Clacu06g0428 327 MobiDBLite consensus disorder prediction 72 93 - -
Clacu06g0428 327 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g0428 327 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu06g0428 327 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1886 Clacu-Chr2:32374989 Clacu06g0428 Clacu-Chr6:5063751 1.30E-39 dispersed
Clacu06g0428 Clacu-Chr6:5063751 Clacu09g2269 Clacu-Chr9:37434207 4.90E-37 dispersed
Clacu05g1519 Clacu-Chr5:18962948 Clacu06g0428 Clacu-Chr6:5063751 1.20E-29 transposed
Clacu08g1185 Clacu-Chr8:21832800 Clacu06g0428 Clacu-Chr6:5063751 5.50E-40 transposed
Clacu10g1153 Clacu-Chr10:24150158 Clacu06g0428 Clacu-Chr6:5063751 1.10E-43 wgd
Clacu05g0773 Clacu-Chr5:6554892 Clacu06g0428 Clacu-Chr6:5063751 7.10E-42 wgd
Clacu06g0428 Clacu-Chr6:5063751 Clacu09g0497 Clacu-Chr9:4297644 1.70E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47854 PF03106 WRKY 6.40E-27 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0428 - - - 0.0