Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g0428 | ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCGGACGACCCTTCCGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTACATCAGCCGGCGCCGCTGCCTTCGCCTCACCCCAACCGCCGCTTGTTTTCCCACAGCCGCAATTATTCCGAAACCACCATCAGCAATATACGTACGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGTGTTTGATCCCGTGTTTCATAGTTTTGGTGGTGATGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA | 984 | 48.27 | MEEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGATSAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRVFDPVFHSFGGDERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5063751 | 5065173 | - | ClG42_06g0042800.10 | Clacu06g0428 | 251076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g0428 | 327 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Clacu06g0428 | 327 | SUPERFAMILY | WRKY DNA-binding domain | 154 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu06g0428 | 327 | MobiDBLite | consensus disorder prediction | 94 | 117 | - | - | |
Clacu06g0428 | 327 | MobiDBLite | consensus disorder prediction | 35 | 54 | - | - | |
Clacu06g0428 | 327 | Gene3D | WRKY domain | 146 | 223 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu06g0428 | 327 | FunFam | WRKY transcription factor 57 | 148 | 222 | - | - | |
Clacu06g0428 | 327 | MobiDBLite | consensus disorder prediction | 68 | 150 | - | - | |
Clacu06g0428 | 327 | SMART | WRKY_cls | 162 | 221 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu06g0428 | 327 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 99 | 230 | IPR044810 | GO:0003700(InterPro) | |
Clacu06g0428 | 327 | MobiDBLite | consensus disorder prediction | 72 | 93 | - | - | |
Clacu06g0428 | 327 | ProSiteProfiles | WRKY domain profile. | 157 | 222 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu06g0428 | 327 | Pfam | WRKY DNA -binding domain | 163 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu06g0428 | 327 | MobiDBLite | consensus disorder prediction | 119 | 135 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1886 | Clacu-Chr2:32374989 | Clacu06g0428 | Clacu-Chr6:5063751 | 1.30E-39 | dispersed | |
Clacu06g0428 | Clacu-Chr6:5063751 | Clacu09g2269 | Clacu-Chr9:37434207 | 4.90E-37 | dispersed | |
Clacu05g1519 | Clacu-Chr5:18962948 | Clacu06g0428 | Clacu-Chr6:5063751 | 1.20E-29 | transposed | |
Clacu08g1185 | Clacu-Chr8:21832800 | Clacu06g0428 | Clacu-Chr6:5063751 | 5.50E-40 | transposed | |
Clacu10g1153 | Clacu-Chr10:24150158 | Clacu06g0428 | Clacu-Chr6:5063751 | 1.10E-43 | wgd | |
Clacu05g0773 | Clacu-Chr5:6554892 | Clacu06g0428 | Clacu-Chr6:5063751 | 7.10E-42 | wgd | |
Clacu06g0428 | Clacu-Chr6:5063751 | Clacu09g0497 | Clacu-Chr9:4297644 | 1.70E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47854 | PF03106 | WRKY | 6.40E-27 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g0428 | - | - | - | 0.0 |