Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g0429 | ATGGCGTCATCTGTTCTTTCGAATTCCGATCGCGCGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAGCCACGGCAACAGAGATCATCATCAAAACCAGAATCATATTAAATGGAAATCTCAAGCTCAACAGGAAATTTACTCGTCCAAGCTCGTACGAGCATTGAATCAAGTGAGACTCGGTCCTTCCAACGAAGCGCCGCCACGCCGCGGTAGAGCTGTACGCGAGGCTGCCGATAGAGTCCTTGCCGTTGCCGCCAAGGGGAGAACCAGGTGGAGTCGAGCCCTATTAACGAACAGGTTGAAGCTCAAGTTCAGGAAGCCCAAGAGACAGAGGTCAGCATCCACCGCTGGAAACAACCGGTCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAGACGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGCCGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTATTCTGGAAGAAGCTACCGATTACATAGCTGCCCTTGAAATGCAAGTTCGAGCCATGAGTGCCCTTGCTGAGTTGCTTTCGGCTTCAACTTCTGCTGCAGGCTCTAGTTCGACTCCTTCAAGCTGA | 612 | 51.47 | MASSVLSNSDRARESSRKQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRALLTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRRKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSTPSS | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5097618 | 5098229 | - | ClG42_06g0042900.10 | Clacu06g0429 | 251077 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g0429 | 203 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 141 | 191 | IPR036638 | GO:0046983(InterPro) | |
| Clacu06g0429 | 203 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Clacu06g0429 | 203 | CDD | bHLH_AtIBH1_like | 130 | 185 | IPR044549 | GO:0006355(InterPro) | |
| Clacu06g0429 | 203 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Clacu06g0429 | 203 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 36 | 188 | IPR044660 | GO:0006355(InterPro) | |
| Clacu06g0429 | 203 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 125 | 174 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g1808 | Clacu-Chr3:31844940 | Clacu06g0429 | Clacu-Chr6:5097618 | 4.10E-37 | dispersed | |
| Clacu02g1527 | Clacu-Chr2:28707180 | Clacu06g0429 | Clacu-Chr6:5097618 | 1.10E-31 | wgd | |
| Clacu05g0771 | Clacu-Chr5:6519069 | Clacu06g0429 | Clacu-Chr6:5097618 | 1.80E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g0429 | - | - | - | 0.0 |