Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0432 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCTTTCGGGCGTCCTACTGATGATTTCACCTCTGGTGGTGTTATTGGGACCAATTGTGGTGCTAAAGACACCAAGGATAGCTTGCTTTGGTTCTATGATTATGGTAAGTATGCTTCCGGTGAATTCTCCATGGCTGTTGTTCAAGCCAACCAAGTTCTTGAGGACCAGAGCCAAATTGAATCTGGCCCTTTTGGTACTTTCGTCGGAATCTACGATGGTCATGGTGGTCCTGACGCTGCTCGTTACGTCTGTGATAACTTGTTTAGACGTTTCCAAGATGAGCAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCGAACGGAGGAAGGGTTCACGGCTGTTGTGTCAGAGTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACATGCTGTCTAGTAGGGGTGATACACGAGCAGACACTCTACATTGCGAGTCTAGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAATTATCGACCGAGCATAATGCAAATCTTGAGGAAATCAGGGAAGAATTAAGCGCCATGCATCATGATGATCCTCAAATCGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATTTGAAACATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGGCTTCCTGAACCAATTGACAGGCCTATATTGACTGCTGTACCTACGATTATTGCTCACCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGAGATTGTCCATAATCATCCACGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTCGAAAACGAGAGATGCGGTATTCGGATCTCCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCATGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGATCTTATATCCAGAAGCAATGTCCTCCTAGATCAACCATTATCAGTAAGAAGTGCTTTTGACCATTAA 1134 44.09 MLRGFMNLLSLCWKPFGRPTDDFTSGGVIGTNCGAKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTRETILNAFRRTEEGFTAVVSELWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEEIREELSAMHHDDPQIVVQRHGVWRVKGIIQVSRSIGDVYLKHAQYNNERINAKFRLPEPIDRPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSAFDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5126609 5130060 - ClG42_06g0043200.10 Clacu06g0432 251080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0432 377 Gene3D - 47 362 IPR036457 -
Clacu06g0432 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Clacu06g0432 377 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Clacu06g0432 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Clacu06g0432 377 CDD PP2Cc 56 353 IPR001932 -
Clacu06g0432 377 PANTHER PROTEIN PHOSPHATASE 53 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu06g0432 377 SMART PP2C_4 49 351 IPR001932 -
Clacu06g0432 377 FunFam Probable protein phosphatase 2C 42 46 361 - -
Clacu06g0432 377 Pfam Protein phosphatase 2C 80 320 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0432 Clacu-Chr6:5126609 Clacu10g0045 Clacu-Chr10:851231 2.10E-116 dispersed
Clacu06g0432 Clacu-Chr6:5126609 Clacu01g2125 Clacu-Chr1:32897366 7.30E-117 transposed
Clacu06g0432 Clacu-Chr6:5126609 Clacu02g1241 Clacu-Chr2:24995670 7.30E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0432 K01102 - csv:101207284 723.391