Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0436 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGTCGCCGGAGGTGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCACCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATCCGAGCATGGTCCGATCGCGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAATGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATCGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAACAATAATAATAATAACAATAATAACAACATCCCTCAAAAGGAAACATAA 2406 46.09 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAVAGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFTIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADPSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNIPQKET 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5164030 5168637 - ClG42_06g0043600.10 Clacu06g0436 251084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0436 801 NCBIfam PAS domain S-box protein 134 244 IPR000014 -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 773 801 - -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 369 383 - -
Clacu06g0436 801 FunFam PAS domain-containing protein tyrosine kinase 502 586 - -
Clacu06g0436 801 SUPERFAMILY Protein kinase-like (PK-like) 492 759 IPR011009 -
Clacu06g0436 801 PANTHER SERINE-THREONINE PROTEIN KINASE 60 764 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu06g0436 801 SUPERFAMILY PYP-like sensor domain (PAS domain) 136 243 IPR035965 -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 344 358 - -
Clacu06g0436 801 Pfam Protein tyrosine and serine/threonine kinase 509 761 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 CDD STKc_MAP3K-like 515 761 - -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 340 383 - -
Clacu06g0436 801 Gene3D Transferase(Phosphotransferase) domain 1 587 801 - -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 35 72 - -
Clacu06g0436 801 CDD PAS 143 244 IPR000014 -
Clacu06g0436 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 Gene3D PAS domain 144 246 - -
Clacu06g0436 801 ProSiteProfiles Protein kinase domain profile. 509 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 PRINTS Tyrosine kinase catalytic domain signature 732 754 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 PRINTS Tyrosine kinase catalytic domain signature 583 596 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 PRINTS Tyrosine kinase catalytic domain signature 669 679 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 PRINTS Tyrosine kinase catalytic domain signature 688 710 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 PRINTS Tyrosine kinase catalytic domain signature 622 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 Coils Coil 6 26 - -
Clacu06g0436 801 SMART pas_2 134 201 IPR000014 -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 435 465 - -
Clacu06g0436 801 SMART serkin_6 509 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0436 801 ProSiteProfiles PAS repeat profile. 132 203 IPR000014 -
Clacu06g0436 801 FunFam PAS domain-containing protein tyrosine kinase family protein 587 778 - -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 93 123 - -
Clacu06g0436 801 Gene3D Phosphorylase Kinase; domain 1 502 586 - -
Clacu06g0436 801 MobiDBLite consensus disorder prediction 775 801 - -
Clacu06g0436 801 Pfam PAS fold 135 243 IPR013767 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0436 Clacu-Chr6:5164030 Clacu11g1648 Clacu-Chr11:27621285 3.60E-89 dispersed
Clacu06g0436 Clacu-Chr6:5164030 Clacu04g1031 Clacu-Chr4:24581566 5.00E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73628 PF07714 PK_Tyr_Ser-Thr 3.70E-69 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0436 - - - 0.0