Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0463 ATGGCCGCTGAGGGAAGCACAGAGACAGACAACCTTCTCACACTTCTCAACCCTCCTTCTTGGCGGATAAAGTGGACTGCAGTGGAAGAAAAGCAGAAAACAGTTCAACTATTGGAGGAAAGAGCCAGCTCTCTTACGCCTTGTGGAATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTCCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCATAGGCCAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAATTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTGAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTGCGGATTCAACTCAACCCGAAAATCCACAAAGTATCGCCCAAAACTCGCTTCTCGATCCCGTGGAGGTCAAAACTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCAACAAGGAGACAACGGATCGGTCGGGTACCAAACGGAAAATATTTATTTCAATGCAAGTCTAAAGCAATCTTCCTCAGAATGCTCACACAGAAGATGCAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAACGGGCACATCGCTGGATTGTCGGCTCGGCTCCATTGTATTTGGAACCAGTTAGGAGATTTCTCATCTCTCTAA 2340 44.62 MAAEGSTETDNLLTLLNPPSWRIKWTAVEEKQKTVQLLEERASSLTPCGMDLSHMKGSMPMPMPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPYGSMASFNGIDLQTLSVTGQLSPQSLAALQATGLHRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQNSSVIGKTIFSFADSTQPENPQSIAQNSLLDPVEVKTQRIPDASYQTDLLSEDFGQDELLGVFLKQQQQGDNGSVGYQTENIYFNASLKQSSSECSHRRCKSYSNFDWRSKPEAIYFRMRVKLFVCNGHIAGLSARLHCIWNQLGDFSSL 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5422022 5429552 - ClG42_06g0046300.10 Clacu06g0463 251111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0463 779 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 265 322 IPR017930 -
Clacu06g0463 779 Pfam Myb-like DNA-binding domain 268 318 IPR001005 -
Clacu06g0463 779 Gene3D - 86 220 - -
Clacu06g0463 779 FunFam Two-component response regulator 262 325 - -
Clacu06g0463 779 SUPERFAMILY Homeodomain-like 263 323 IPR009057 -
Clacu06g0463 779 MobiDBLite consensus disorder prediction 209 263 - -
Clacu06g0463 779 MobiDBLite consensus disorder prediction 209 226 - -
Clacu06g0463 779 SUPERFAMILY CheY-like 85 209 IPR011006 -
Clacu06g0463 779 CDD REC_typeB_ARR-like 88 202 - -
Clacu06g0463 779 MobiDBLite consensus disorder prediction 227 242 - -
Clacu06g0463 779 MobiDBLite consensus disorder prediction 478 511 - -
Clacu06g0463 779 SMART REC_2 86 198 IPR001789 GO:0000160(InterPro)
Clacu06g0463 779 MobiDBLite consensus disorder prediction 243 263 - -
Clacu06g0463 779 MobiDBLite consensus disorder prediction 495 511 - -
Clacu06g0463 779 Pfam Response regulator receiver domain 88 196 IPR001789 GO:0000160(InterPro)
Clacu06g0463 779 FunFam Two-component response regulator 86 223 - -
Clacu06g0463 779 NCBIfam myb-like DNA-binding domain, SHAQKYF class 266 319 IPR006447 GO:0003677(InterPro)
Clacu06g0463 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR 83 419 IPR045279 GO:0009736(InterPro)
Clacu06g0463 779 Gene3D - 263 325 - -
Clacu06g0463 779 ProSiteProfiles Response regulatory domain profile. 87 202 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1796 Clacu-Chr5:27168716 Clacu06g0463 Clacu-Chr6:5422022 1.50E-88 dispersed
Clacu06g0072 Clacu-Chr6:874565 Clacu06g0463 Clacu-Chr6:5422022 4.70E-40 dispersed
Clacu06g0463 Clacu-Chr6:5422022 Clacu06g1305 Clacu-Chr6:23960247 1.60E-81 dispersed
Clacu05g0738 Clacu-Chr5:6207635 Clacu06g0463 Clacu-Chr6:5422022 1.20E-215 wgd
Clacu06g0463 Clacu-Chr6:5422022 Clacu09g0545 Clacu-Chr9:4653005 2.00E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47859 PF00072 Response_reg 7.70E-22 CL0304 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0463 K14491 - csv:101210138 1210.28