Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0474 ATGGTGCTTTTCCCGGAAGTCATTGAAGAAATGGTAAGAAATATGTCGATAAAGAAAAAGAATAATGAAGATGATGGCGGTAAAGAAGGGGGTCGAGAAGTAATGAGTAAAGAGGGAAAAAGAAAAAAATCCATGATTTGTTTATCTGGAAGTGTTAAAACCACCAAGTTCGATGATATGGCTTCTGTTTGCTCCAAGAGAGGAAATAAAGGAATTAATCAGGATTCGCTCGTTGTTTGGGAGGATTATGGCAACCGAGGAGATGTAGTTTTATGTGGAATGTTTGATGGGCATGGGCCTTGGGGCCACATGATTAGCAAACAAGTCAGAAAGTCACTACCTTCTCAATTACTTACCAATTGGCAACAAAACCTTTCCATGCAAACCGACCAAAACCATCTCTTTCCTTTCAACCTATGGAAGCAATCTTGCTTAAAAACTTATGCCGCCATTGATGAAGAGCTCAAGCAACACCCTCGCATTGATTCTTTTTACAGTGGCACCACCGCTTTAACCCTCGTTAAACAGGGGCGACACCTTGTTGTTGCAAATGCTGGCGATTCACGGGCTGTGTTGGCGGTAACTTCTGGTGATGGCTGCTTGAAACCAATTCAACTCTCCGTTGATTTCCGACCTAATTTGCCTGAGGAAGCTGAAAGAATAAAACAATCGAAAGGGAGAGTGGTATGTTTAAAAGATGAACCTGGGGTTTATAGGGTGTGGACTCCCGATTCAAGGACTCCAGGATTGGCAATTTCTAGAGCTTTTGGCGATTATTGCACCAAACAGTATGGTCTCATTTCTGTGCCTGATGTAAGCCATCGAATCATCACTACTTCAGATCAATTTGTCATTGTCGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTCTTCAACACCAAATAGGGAAATGTCGGCCAAAAGGCTAGTGGATTGTGCTGCACGTGCATGGAAATCAAAGAAACGAGGATCATTTACGCCATTGTTTGAGCTTCTGATTCGCGCGGGCAGTGCCATATCGTTTCGCTCTCAAATTCGCTCATCTCTAAGCCATTCCCCTTCGCATCGCATCCTAATCCGAAGGAACTTCGAGATGAGTCCGATTTTGAATGAAGCAGAACCGAAGGAACTGCGAGATGAGTCTGATATTGAAGCAATCTTCTCCGACGGCGATTATATTTCTGTTTTTGGCGTTGAATCTCTCCTCTCAGAACCAAAGGAGCTGCGAGATGAGTCCGATTTTGAAGCAATCTTCTCCGACGGCGATTATATTTCCGTTTGTGGCTTTGGATCTCTCCTCTCTGAGAGGAGTGCGCGAAGTACTTTTCCTGATTTGATCAACTTTAGAGTTGCGAGATTGAACGATTTCAGACGCGTTTTCGGAATTATAGCCCCTATATTCTTTGACCACGGCATTGCTAAATCTGAAACCAAGGAGATTTCAAGCTTATTTGCGGAGCCTTGTGAAGGAGAAACTATCATCATTACAGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTCATACAGAGAGAGTTTGCGTTTCGATTTCTAGCTGTTCTTCCTGAAACATTAGACGGAAAGCTATATGATAAACCAGCGGTGCTTTGTTCTCGATCCACTAACGAGGAGTTTTTCCAAGTGAAATGCAAAGGAAACAAGGACATTTTTCTTCAGCATTATGGTCGTCATAATATTGATAAGATCTGGAGAGATGATATCTTACCTTGA 1755 42.91 MVLFPEVIEEMVRNMSIKKKNNEDDGGKEGGREVMSKEGKRKKSMICLSGSVKTTKFDDMASVCSKRGNKGINQDSLVVWEDYGNRGDVVLCGMFDGHGPWGHMISKQVRKSLPSQLLTNWQQNLSMQTDQNHLFPFNLWKQSCLKTYAAIDEELKQHPRIDSFYSGTTALTLVKQGRHLVVANAGDSRAVLAVTSGDGCLKPIQLSVDFRPNLPEEAERIKQSKGRVVCLKDEPGVYRVWTPDSRTPGLAISRAFGDYCTKQYGLISVPDVSHRIITTSDQFVIVATDGVWDVMSNQEAVHIVSSTPNREMSAKRLVDCAARAWKSKKRGSFTPLFELLIRAGSAISFRSQIRSSLSHSPSHRILIRRNFEMSPILNEAEPKELRDESDIEAIFSDGDYISVFGVESLLSEPKELRDESDFEAIFSDGDYISVCGFGSLLSERSARSTFPDLINFRVARLNDFRRVFGIIAPIFFDHGIAKSETKEISSLFAEPCEGETIIITVFEIKKSEIPAFIQREFAFRFLAVLPETLDGKLYDKPAVLCSRSTNEEFFQVKCKGNKDIFLQHYGRHNIDKIWRDDILP 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5517466 5526447 - ClG42_06g0047400.10 Clacu06g0474 251122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0474 584 Gene3D - 50 333 IPR036457 -
Clacu06g0474 584 MobiDBLite consensus disorder prediction 18 41 - -
Clacu06g0474 584 Pfam Protein phosphatase 2C 86 322 IPR001932 -
Clacu06g0474 584 ProSiteProfiles PPM-type phosphatase domain profile. 60 340 IPR001932 -
Clacu06g0474 584 PANTHER OS05G0358400 PROTEIN 414 584 - -
Clacu06g0474 584 SUPERFAMILY PP2C-like 60 325 IPR036457 -
Clacu06g0474 584 SMART PP2C_4 50 324 IPR001932 -
Clacu06g0474 584 CDD PP2Cc 60 327 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1792 Clacu-Chr3:31650208 Clacu06g0474 Clacu-Chr6:5517466 4.00E-96 dispersed
Clacu06g0474 Clacu-Chr6:5517466 Clacu11g1155 Clacu-Chr11:16443496 4.80E-83 dispersed
Clacu06g0473 Clacu-Chr6:5506233 Clacu06g0474 Clacu-Chr6:5517466 5.90E-80 tandem
Clacu02g1564 Clacu-Chr2:29032715 Clacu06g0474 Clacu-Chr6:5517466 7.30E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0474 - - - 0.0