Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0475 ATGAGGTTTGTCCCTCCTACGTCTGCTTGCTACTCCCGCTTTCTCTTCCTTGATCGTAGTTGGTCCTGCTTTCTCTTGCTGCTCAAGATGGTCGATTGCTACTGTCGGCTACCTATGCCTGCCTCGACCATCTCTAAAAAGCAAAAAAAGAGGCCTTCAACGAGAAGAAATTTCGATCTCTCCATTTCTCTGTTTTCTGTTTTCTGTGGATTAAGACTCTTCAATTGTGGCCGAATTCGATCAAACCAAGCCGCTGTGGCGTTGGACAGATTAGGAATGGGATCGGAGCAGTTGATGGCCGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTTCGGCTTCGATGTCGTCGTTTTTTTCATTTCATCACGACGCTCCTGAGCCGACAAGGATTTTTGATGAGTTGCCGCAGGCCACAATCATTTCCGTCTCTCGACCTGATGCCGGCGATATCAGTCCCATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGCTGAAGAAAGCTTCCCATGTATTTTATTTGCATTTCGCATTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCAAACAACAGTGCCCCAAGATGAGGATGGACCCGATGATGAGACCGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTAGGAAGGCAGCACTCTATGTCTGATAGAGCTAAGAATGCAATGCAAGGGTATCTGAATCACTTTTTGAGTAATATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATACGGCCCAAAATTGAAAGAGGATTATGTCATGGTGAAGCACCTACCTAAAATTCCGAAGGAAGATGACTCTAGGAAATGTTGTCTATGCCCTTGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGGTTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCGGATGGCAATGGAGATGGACGAGTATCCCTGGCTAAGGAAATTAAAGAGCGAAATCCATTACGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATTAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGCTCTTATGCTCCACCAAGAGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTCATTGATGGCCTAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGAGGCGTCCTTTTGTTTCAAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAATAGTGTTTATAGCAAGAGAAAACTTCTTGGTATCCATGAGAACGTGAGAGTATTGCGCTACCCCGACCACTTCTCCAGCGGTGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCCGAACATAAAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAAGAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTCTGGGGACCATCTTGTAGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAACGAGCAGGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACAATTCTAGAGGAACAACAGTGCAGGATTCGTTTTCTCGAGGATCATCTTTCCACGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGATGCTGAAAATGAAGGTCCAAAATTAAATGGACTGGAGCCCATTGTCAATCCCCTTGATCAGCCAAGTAAGGTCAGCAGCGGTCTCTCTTTTTCTTTCAGGAAGATCAAAGTTGAACCCGTAGGACCCGATATGCCTCTGAAAGGTTTTGTTGATGATCTTGACCATTTGGATTCCCATGGAAAGTTGTCTGGAGATGGGAAAACACATCATCTTGTCAAAAGTTCGGATTTTGAGTGGTGGGAAACACAAGACAGAGGACATCATGGTGGCTTCACAGATGAATCTGGACAAGTTGGTCCATGTGCTTCATGTCGTTGCCAGGTCATCAGAAGCGTCAGTCAGTGGTCTGCTGGGACAAGCCGAACTGAAGAAAGCATTCACACTGCATACTGCTCTCTTATTGAGAAAGCAGAACATTTTATCTACATCGAGAATCAATTTTTTATATCAGGCCTCTCGGGAGACGATTCAATACGGAACCGTGTATTAGAAGCATTATACCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGATTTTTAGGGTCATTATTGTCATACCACTCTTACCTGGATTTCAGGGGGGTCTGGACGATAGTGGTGCAGCATCGGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAGAATTCAATATTGCATAATCTTTATGATCTCCTTGGTTCAAAAGTTCATGATTATATATCATTTTACGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATTGATGATTGTATTGCTTTGATTGGATCGGCTAATATCAACGACAGAAGTTTACTTGGTAATAGGGATTCCGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCATATATGGGAGGACAACCATGGAAAGCAGGGAAATTTTGCTGGAGTCTACGTCTCTCTCTTTGGTCGGAACATCTCGGTCTTCGTCCCGGACAGATCAATCAAATAGTTGACCCAGTTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGACAAACACAACAATATACCAAGATGTTTTTTCTTGCTTACCAAACGACCTCATAAATTCAAGAGCTGGACTGAGACAGAGCGTTACAATCTGGAAAGAGCGACTGGGACACACGACAATAGATCTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATAGAAAGGATTGATCCAATGGAGAGATTAAGCTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTGGAATTCCTCAGCAAAGAAGACTTAAGACCTGTGTTCAATGAGAGTGAGTATTATGCATCTCAAGTTTTTCATTAA 3618 43.15 MRFVPPTSACYSRFLFLDRSWSCFLLLLKMVDCYCRLPMPASTISKKQKKRPSTRRNFDLSISLFSVFCGLRLFNCGRIRSNQAAVALDRLGMGSEQLMAGGGPRYVQMQSEPPSASMSSFFSFHHDAPEPTRIFDELPQATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTTVPQDEDGPDDETDPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDSRKCCLCPWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPSCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSFDNSRGTTVQDSFSRGSSFHDIPLLLPQEADGQDAENEGPKLNGLEPIVNPLDQPSKVSSGLSFSFRKIKVEPVGPDMPLKGFVDDLDHLDSHGKLSGDGKTHHLVKSSDFEWWETQDRGHHGGFTDESGQVGPCASCRCQVIRSVSQWSAGTSRTEESIHTAYCSLIEKAEHFIYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKIFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYDLLGSKVHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGNRDSEIAIVIEDNELINSYMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPVADSTYKDTWMATAKTNTTIYQDVFSCLPNDLINSRAGLRQSVTIWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5534722 5545321 - ClG42_06g0047500.10 Clacu06g0475 251123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0475 1205 SMART pld_4 569 596 IPR001736 GO:0003824(InterPro)
Clacu06g0475 1205 SMART pld_4 1002 1029 IPR001736 GO:0003824(InterPro)
Clacu06g0475 1205 PIRSF PLD_euk 126 720 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Clacu06g0475 1205 PIRSF PLD_euk 776 1205 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Clacu06g0475 1205 ProSiteProfiles PH domain profile. 343 434 IPR001849 -
Clacu06g0475 1205 PANTHER PHOSPHOLIPASE D 271 1186 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu06g0475 1205 Pfam Phospholipase D Active site motif 569 596 IPR001736 GO:0003824(InterPro)
Clacu06g0475 1205 CDD PLDc_vPLD1_2_yPLD_like_1 462 607 - -
Clacu06g0475 1205 FunFam Phospholipase 836 1056 - -
Clacu06g0475 1205 SUPERFAMILY Phospholipase D/nuclease 414 688 - -
Clacu06g0475 1205 Coils Coil 190 210 - -
Clacu06g0475 1205 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 569 596 IPR001736 GO:0003824(InterPro)
Clacu06g0475 1205 SUPERFAMILY Phospholipase D/nuclease 842 1051 - -
Clacu06g0475 1205 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1002 1029 IPR001736 GO:0003824(InterPro)
Clacu06g0475 1205 CDD PH_PLD 285 432 - -
Clacu06g0475 1205 MobiDBLite consensus disorder prediction 214 245 - -
Clacu06g0475 1205 SUPERFAMILY PH domain-like 340 432 - -
Clacu06g0475 1205 SMART PH_update 308 436 IPR001849 -
Clacu06g0475 1205 Gene3D - 335 432 IPR011993 -
Clacu06g0475 1205 Gene3D Endonuclease Chain A 833 1059 - -
Clacu06g0475 1205 CDD PLDc_vPLD1_2_yPLD_like_2 862 1046 - -
Clacu06g0475 1205 Gene3D Endonuclease Chain A 457 695 - -
Clacu06g0475 1205 Pfam PLD-like domain 1003 1051 IPR025202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0475 Clacu-Chr6:5534722 Clacu08g1564 Clacu-Chr8:25477023 1.80E-39 dispersed
Clacu02g1566 Clacu-Chr2:29056899 Clacu06g0475 Clacu-Chr6:5534722 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0475 K01115 - csv:101211856 2201.4