Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0494 ATGGAGGAAGCCATTTCTCGAATCCTCACGGAGCTCGAAGAAGTTCGCCATTTCGACGACTCTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGATTCCTCTCTCTTCGACCTTCAAAGCTTATTAGACAACTCAATCGGTACCGATGAACAACCACCACTTGATCGCCTCTACGACGACCTCTCGGCCAAATCCCTCTCTCCGTCTTCTCTTACCCGAGCCATCGCCTCCGCCATGGACGAGTCTTCCACTCGCGTTTCGATTTTAGCTTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTGTTCACGCTGTTCAATCCGATGGATTTTCTTTCGTTTCTCAGGTCGATGAGGCGATTATTGAAGCAGCGACCGCGGGCTCAACCGGACCAGGATGATTCTAGTAAGGAGTCTAATGCTCCCAAACGGAAGAGGAAAGCCGGTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGCAGAGTTTTAGTGGCAGGTATGATGATGGTGAATTCGATGCAAGAGTCTTGTATCCTGTACTTGAGAGGTTAGAGAATTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTAAAATCTTTGATTGAAACCGTAATTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTCACTAATTTATGTTCACGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATATATCGAGTACTGCCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTATTAATCATAAGGATCAGGCGCGGGCGTTTGCGCTAGGGTTTGTGACTATTCAAATAGCAAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCTCCTGAGAAATCTGAGCCTCGTAGTTTAGCAGTTGATTCAATAATGGAGGTTCTTAAAGTGATGGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCAGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTTATCTCAATGCTGATCACGTCCTTGAGTGATCCAATGGCCATTGATTCCGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTGGTTCAACGTTGTTCAGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCACCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTACTGGAGGAACTGTTGGGGTCTGGTGACAGACATTGCAAAAAAAGTGGAGGTGAAATTCATGCTCTTTTGCGAAAAAGGTGTATGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGCACAACCCTCCTTGGTGGAGCAATGGATGGAGATATGCTGAAAACGGTGGGAATTGCTTGTTCTGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGGCCTTTCGAAGATTCCCAGATGAAAGTGTCATGGTCGAGTGGCTACACTCTATTCCACGTTTAATTGCTGACAGTGAATCTAGCATTCAAGAAGAGTGTGAACACTTGTTTCAAGAACTAGTACTAGACCGGTTGTCTAGAGTTGGATCTTCAAGTTTACCTAAAGGAGCATTGAATCTTCTTAAAGAGATGAGTCATGCAGAGGTAATTCCTTGGGTGAGGAAAGTTTGTGCTAATTTGGGAAAAAAGAAAAAATTAAAACGCACAATTGCGGATTCACTTCAGATAATTATAAAGACATCTGAATCCTTTTGGCTAAGCCAATCTTTGCCTCCAGAGAGGTGGACAGCTCCCCCAGGTGCCTGGTTCCTGCTGGCAGAAGTATCGACTTATCTTGGGAAAGCCGTTGATTGGGAGTTTCTTCATCATCACTGGAAACTCCTTGATGATCATGGTAGGACTGAGTTTCAGAGTCCAGTGGCTCAAGTAGGTTTATTTGGAGAGGAAAACAACTCAGAGTCAAATTCCGTCACTTGGGCTCAAGATCGAGTTTTTCTCTTACAAACCATTTCTAATGTTTCTGTTGAGCTGCCTCCAGAACCTGCAGCAGAATTAGCTCATGAATTGCTTAAAAGGGTTGAAGAATTTAACATGCATTCAACGGAGGTGAATGCACATGTAAAAACACTTAAAACATTGTGTAAGCGGAAGGCTTTGCAATCTACTGAAGCCGATGCCCTTATCCTAAAATGGGTGAACCAGCTGCTTTCCAAAGCCTCTCACATATTGGAGAAGTACATATCCAAGCATGCAGAAGCAAACAAAGATGTGAACTTCGTAACTCCACCTCCTAAAAGTGGTAGTCGAATTGGGAAGAAAGCAACTGCCAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCATCATACCACTTCTCCACACCATTATCACTTCTGGAAACCGTGATCCCAAATCTAATAAACTACCAATTCAAACTGCATCTCTAAAGGAAACTGCCCCTTCTTTATACGTTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTGCTGACGAGAAGCGTGCAAAGAGTTACATTCCTCTATTTGTACAGGAGCTTGGAAATAGTGATTGTGCAGCTCTTCGCAACAACCTTATTATCACAATGGCAGATTTTTGTGTACGCTATACTGCTCTAGTTGACTGCTACCTTACGAAAATCACAAAGTGCCTTCGGGACCCTTGTGAACTTGTCAGAAGACATACATTCATACTTCTATCGAGATTACTACAGAGGGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTTGATGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTTGGGAACATTTTAAAAGTGAAGGCACCACTGTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTTTGAATGACTGTCGTGCTCATTCTGGACATAGCGATTCAAATGCTTCACGAGCTGAAAGTCGACTATTCTCCATCCGAGGCAATGATGAAAGGTCGAGGTTCAAGAGAATGCACATTTATGTTTCTCTGTTGAAACAAATGGCTCCTGAGCATCTTTTGGCAACCTTTGCAAAGTTATGTGCAGAGATTCTTGTTGCAGCATCAGATGGTATGCTCAATATAGATGATACCACTGCACGGTCTGTTTTACAGGATACCTTTGATATTCTTGCTTGTAAAGAGATCCGACTATCGGTAAATCGAGTATCATCATCAGATTCTGGTGATGTAGATGAGGAAGGAGGCGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCATGCAGTGAGAAAGAGTCTCATTCAAAGCACCATACCCATCTTCATTGAGTTAAAAAGGTTAATGGAAAGCAAGAATAGCCCCCTTATAGGTTCCCTCATGGAATGTCTTCGAGTTCTTCTCAAAGACTACAAGAACGAAATCGATGACTTATTGGTAGCCGATAAGCAACTTCAGAGAGAGCTCCTCTATGACATTCAAAAGTATGAATCTACCAAAGCCAAGTCAGCTGCTGCCGAGGCGGTCAACGAGATGCATAAGTCAACTAACTATCTTTCGCCTGAGGCTCCTCCTCAAGCTAGAAGTGCCATTAACAAGCTAACCTCAAAGATTCGAAATGACTTGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGGGAAGTGAATAGAGGGGCTTCGACACCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGACACAAATACCTCACATTTTAATGTGATTGAATCTTTAAGAAAACGTCAGTCTTTTGAAAACGACGGCGGCTTACAGGTAGAAGTTCAACTATTGTTTCTGCATCTGGTTCATCTGAAAGGATGTCAACATCTGCAATTATGGAAAGAATTCCAAGCAAGTGGCAATGTCCGGTTTGGCAAGCTCCATGGAGAAATTATAGGGTCTTGCTGTCAGCAACAGGCATACCATGTGTTTTCAGCTGGTGATGACAAACAAGTTAAATACTGGGACATGGAACAGAATAAGGTAATTTGTCATTACCATGGTCATCTGAGTGGTGTTTACTATTTGGCTCTTCATCCAACAATCGATGTTTTGCTTACTGGGGACATGATTCTGTCTGCTGGGCGTGGGATATTCAAAGTAAGATGCAAATTAATGCCCTCTTTGGGCATGATAAGACAGTTTGCTCGGTTTTTACTTAACCAGCGTTTTCAGCAGAAGACTATAATCAATGCAATTACTGTCAATGAGGAGGGTGTTATGGTGACTGGAGACAAGGAAGGAGGCGAGAATGGAGGAGCATTTGCTGCTAGAGAAAAGATCACCACTCATGAAGTGAGAAAGAGTCTCATTCAAAACAACATATCCATCTTCATTGAGTTAAAAAGGCTTATGGAAAGCAAGAATTGCCCCCTCATAGCTGCTGCAGCCACGGCGAAGTTTGTGCTTAGGAAAGTGAACAGAGGGGCTACGACACCGCCTCTCAATTCTCTAAGTTTGCCAAAACTCAAGTCTCATACTGGTGGAAACAATGGCACAACAGCCCGACTCCCAGCTCGGTGTTCATCGGTAAGAAATCTTTTGTACGAATTCGATCTTCAGAATGAATCAAGATCCTCATCTTTCTTCATGTTTCAAGCCATCAATCTCTTTATATCAGGTTTTTTGGAAGATTGTGTCGGTGCGATTATGGATGGGAATAAGGACGAAGCTTTAAGATGTATTCGCATGGCGGAAGAAGCAATTGCATCGGGGAATAAAGAGCGAGCACTTAGATTCATTAAAATTGCTTGTCGCCTTAATCAGAGTTTGCAAGTGGATGAGCTATTGACGGCGTGCGAAGAGATCGGTTCGGGATCGCCTTCATCTTCTTCCGATGAGAAACGCGCGGGAAAAGTTGAGAGTGTTTCTGGTTCAGTGAAACATGTTGATGGTTTGAATGGTGAACGTAATTACACTATAGAACACGTTCAGTTGATTAGGCAGATAAAAACAACCAAGGACTATTACAGAATTCTTGGTGTGGAGAAAACTAGTTCGGCTGAAGAGATTAAGAAAGCTTATAAGAAATTGTCCTTGAAAGTTCACCCTGATAAAAACAAGGCTCCTGGTTCAGATGAAGCATTCAAGAAATTATCCAAGGCTTTCATGTGTTTGAGCGATGATACTTTGAGGAGGCAATATGATCACACGGGTTTGGTTGATCAGTATGAGTACAACCAACAGCATAATGTAAGGCATAGGAGAAGGAGAACGGGTCATGATTTGTTTGAAGAAAATTTCGATCCTGATGAGATACTCAGAGCGTTCTTTGGGCAGGGAAATATGTTTCAGACTAGTCGTGCTTATACTTATAGAACTGGAGGTGCGGGAAGCCAACAGAGGACAGAATCTGATGGGGGAGGTCCCAGCTTGTTGATTATTCTTCTAATGTTACCATTCTTGTTAATTTGCTTGTTGGCTTATATGCCATTTCCAGAGCCGGACTATGCTTTGCATAAAAACCTATCCTATAGTGTTCCTATGGCAACGGAGAAACATGGAGTGGAATTTTTTGTTAAATCATCTGATTTTGATGTAAGATATCCTCCTGGAAGCCCAGGTCGAGCTGAAATAGAGAATAGTGTGCTGAGGGATTATAGAAACATGGTTTGGCGTTATTGTCATGTAGAACTCCAGAGACGCCAGTGGAATAGAAATCTCCCAACTCCTCACTGCGAGAAGCTGAATAATCTCGGTGTAGCATAA 5925 43.21 MEEAISRILTELEEVRHFDDSTTLHSQPPPPLSDSSLFDLQSLLDNSIGTDEQPPLDRLYDDLSAKSLSPSSLTRAIASAMDESSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFLRSMRRLLKQRPRAQPDQDDSSKESNAPKRKRKAGVKGKGLGNCALRQSFSGRYDDGEFDARVLYPVLERLENLMSLIHLDRFPDSLKSLIETVIDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDISSTAVEVIKSLSPLIINHKDQARAFALGFVTIQIANVAKESDGVKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEVLKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAHLVVFLSENDKNKALLEELLGSGDRHCKKSGGEIHALLRKRCMDEKAAVRKAALFLVTKCTTLLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSEAFRRFPDESVMVEWLHSIPRLIADSESSIQEECEHLFQELVLDRLSRVGSSSLPKGALNLLKEMSHAEVIPWVRKVCANLGKKKKLKRTIADSLQIIIKTSESFWLSQSLPPERWTAPPGAWFLLAEVSTYLGKAVDWEFLHHHWKLLDDHGRTEFQSPVAQVGLFGEENNSESNSVTWAQDRVFLLQTISNVSVELPPEPAAELAHELLKRVEEFNMHSTEVNAHVKTLKTLCKRKALQSTEADALILKWVNQLLSKASHILEKYISKHAEANKDVNFVTPPPKSGSRIGKKATARSKSLSRAITAAYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQTASLKETAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQELGNSDCAALRNNLIITMADFCVRYTALVDCYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHSDSNASRAESRLFSIRGNDERSRFKRMHIYVSLLKQMAPEHLLATFAKLCAEILVAASDGMLNIDDTTARSVLQDTFDILACKEIRLSVNRVSSSDSGDVDEEGGESGGASAARGKVITHAVRKSLIQSTIPIFIELKRLMESKNSPLIGSLMECLRVLLKDYKNEIDDLLVADKQLQRELLYDIQKYESTKAKSAAAEAVNEMHKSTNYLSPEAPPQARSAINKLTSKIRNDLKVASAIADAAAAATAKSVLREVNRGASTPPLGSLSLPKLKSRTGGNNDTNTSHFNVIESLRKRQSFENDGGLQVEVQLLFLHLVHLKGCQHLQLWKEFQASGNVRFGKLHGEIIGSCCQQQAYHVFSAGDDKQVKYWDMEQNKVICHYHGHLSGVYYLALHPTIDVLLTGDMILSAGRGIFKVRCKLMPSLGMIRQFARFLLNQRFQQKTIINAITVNEEGVMVTGDKEGGENGGAFAAREKITTHEVRKSLIQNNISIFIELKRLMESKNCPLIAAAATAKFVLRKVNRGATTPPLNSLSLPKLKSHTGGNNGTTARLPARCSSVRNLLYEFDLQNESRSSSFFMFQAINLFISGFLEDCVGAIMDGNKDEALRCIRMAEEAIASGNKERALRFIKIACRLNQSLQVDELLTACEEIGSGSPSSSSDEKRAGKVESVSGSVKHVDGLNGERNYTIEHVQLIRQIKTTKDYYRILGVEKTSSAEEIKKAYKKLSLKVHPDKNKAPGSDEAFKKLSKAFMCLSDDTLRRQYDHTGLVDQYEYNQQHNVRHRRRRTGHDLFEENFDPDEILRAFFGQGNMFQTSRAYTYRTGGAGSQQRTESDGGGPSLLIILLMLPFLLICLLAYMPFPEPDYALHKNLSYSVPMATEKHGVEFFVKSSDFDVRYPPGSPGRAEIENSVLRDYRNMVWRYCHVELQRRQWNRNLPTPHCEKLNNLGVA 1974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5714865 5730058 + ClG42_06g0049400.10 Clacu06g0494 251142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0494 1974 Gene3D - 347 556 IPR011989 -
Clacu06g0494 1974 MobiDBLite consensus disorder prediction 1286 1307 - -
Clacu06g0494 1974 SUPERFAMILY WD40 repeat-like 1365 1428 IPR036322 GO:0005515(InterPro)
Clacu06g0494 1974 Pfam Domain of unknown function (DUF1977) 1885 1955 IPR015399 -
Clacu06g0494 1974 Gene3D DnaJ domain 1724 1842 IPR036869 -
Clacu06g0494 1974 PANTHER CONDENSIN 1490 1533 IPR026971 GO:0000779(PANTHER)|GO:0000799(PANTHER)|GO:0007076(PANTHER)|GO:0007076(InterPro)|GO:0010032(PANTHER)|GO:0042393(PANTHER)
Clacu06g0494 1974 SMART dnaj_3 1726 1783 IPR001623 -
Clacu06g0494 1974 MobiDBLite consensus disorder prediction 1116 1135 - -
Clacu06g0494 1974 Coils Coil 1176 1203 - -
Clacu06g0494 1974 MobiDBLite consensus disorder prediction 129 150 - -
Clacu06g0494 1974 CDD DnaJ 1727 1780 IPR001623 -
Clacu06g0494 1974 MobiDBLite consensus disorder prediction 128 158 - -
Clacu06g0494 1974 ProSiteProfiles dnaJ domain profile. 1727 1791 IPR001623 -
Clacu06g0494 1974 SUPERFAMILY ARM repeat 340 1233 IPR016024 -
Clacu06g0494 1974 Pfam DnaJ domain 1727 1788 IPR001623 -
Clacu06g0494 1974 Pfam non-SMC mitotic condensation complex subunit 1 908 1076 IPR032682 -
Clacu06g0494 1974 SUPERFAMILY Chaperone J-domain 1723 1803 IPR036869 -
Clacu06g0494 1974 Gene3D - 1349 1435 IPR015943 GO:0005515(InterPro)
Clacu06g0494 1974 PRINTS DnaJ domain signature 1763 1783 IPR001623 -
Clacu06g0494 1974 PRINTS DnaJ domain signature 1729 1747 IPR001623 -
Clacu06g0494 1974 PRINTS DnaJ domain signature 1747 1762 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0494 K11491 - - csv:116405799 1994.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0494 Clacu-Chr6:5714865 Clacu06g1184 Clacu-Chr6:22358485 1.50E-59 dispersed
Clacu06g0494 Clacu-Chr6:5714865 Clacu06g1183 Clacu-Chr6:22352511 4.30E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g188 . . . . . . . Bma05g01033 . Cmo17g00319 . . . . . . . . . . . . . . Cla06g00476 Cam06g0510 Cec06g0511 Cco06g0514 Clacu06g0494 Cmu06g0496 Cre06g1267 . . Cone7ag0143 Cone4ag0147 . . Chy11g01513 . . . . . Bpe05g00834 . . . . . . . Cma17g00329 . Car17g00303 Cpe12g00279 . Bhi12g02049 . . . . . . . . . . . . . Lsi09g01433 . . Cme11g02015
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31