Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0531 ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAGACCTTTTGGCCGCCTAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGACGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTACGTTGGGAAATTGAGATCTAATTTCCTTGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAATGTATCATGGACGCTATTCCCGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCAGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAATGATACACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCACACATCGTTTAACAGGGAATGGACGCTCAATTTGAAGGTCTACTGA 1134 47.18 MSLKSIFQDMRSRSRCVVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDTPTPEHEKIILQFGKVGKDLFTMDYHTSFNREWTLNLKVY 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6053206 6056336 - ClG42_06g0053100.10 Clacu06g0531 251179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0531 377 CDD F-box_AtTLP-like 35 79 - -
Clacu06g0531 377 SUPERFAMILY Tubby C-terminal domain-like 84 364 IPR025659 -
Clacu06g0531 377 Pfam Tub family 97 363 IPR000007 -
Clacu06g0531 377 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Clacu06g0531 377 PANTHER TUBBY-RELATED 22 366 - -
Clacu06g0531 377 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Clacu06g0531 377 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Clacu06g0531 377 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Clacu06g0531 377 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Clacu06g0531 377 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Clacu06g0531 377 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Clacu06g0531 377 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Clacu06g0531 377 PRINTS Tubby superfamily signature 316 332 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0531 Clacu-Chr6:6053206 Clacu08g0497 Clacu-Chr8:8779629 1.90E-109 dispersed
Clacu05g0667 Clacu-Chr5:5615677 Clacu06g0531 Clacu-Chr6:6053206 3.00E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47863 PF01167 Tub 8.20E-96 CL0395 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0531 K19600 - csv:101203437 702.205