Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0542 ATGAGAACTTCATATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCAGTACTCTTCTTGCTCTTCAGGTCGTCAATGGAGCTTTGATCAATAATTTCTATAGGAGAAGTTGCCCCAAAGCTGAGAGAATCATTCAAGACGTCACCTTTCGTCTTGCACGATCAAATCCCAGCCTCGGCGCTCAACTCCTCAGACTTCAATTCCACGACTGTTTCGTTCGGGGATGTGATGCTTCAATTCTATTAGATACCGTTGGAACAAACCCATCAGAGAAAGATGCAAGGCCGAACCAATCTCTATTAGGGTTTGATGCCATTGACAAAATCAAGTTTGAGGTCGAAAAAGCTTGTCGTGGAGTTGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTCGTGATGCTGTTTCTTTTCCGTTCAAGAATCGGCCGCAATGGCCAGTCTTAACCGGAAGAAGAGACGGGACAGTTTCACGATCATCAGAAGTTACCGGTAATATTCCGTCGCCGTTCTCCGATTTTGCCACTCTTAAGCAACTCTTCCAGAAGAAAGGCCTAACCGTGACCGACCTGGTGATTTTATCAGGTGCTCACACAATTGGAGTAGCTCATTGTGGCACATTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAGATCCAAAATATGCAGATTTCCTTAGAACAAAATGTCCAAATCCAGCTGACCCTTCCATTACAGTTGAAATGGATCCAAGGAGTTCTCGTTCCTTTGACAGTGACTATTTCAAAATTGTCACACAAAAAAAGGGTTTGTTTCAATCTGATGCCGCACTTCTCACCGACGCTTCGTCGTCTCGTACCGTCAAACAGTTGCAGAATCCAAGGGCTTTCTCTTCTAGCTTTGCTAATTCCATGTTAAAGATGGCTGCCATTGAAGTACTCACGGGACCTAATAATGGTGAAATTAGACAACGATGTCGTTTTGTCAATTAA 990 43.84 MRTSYHGFPLFSVLVFSTLLALQVVNGALINNFYRRSCPKAERIIQDVTFRLARSNPSLGAQLLRLQFHDCFVRGCDASILLDTVGTNPSEKDARPNQSLLGFDAIDKIKFEVEKACRGVVSCADILALAARDAVSFPFKNRPQWPVLTGRRDGTVSRSSEVTGNIPSPFSDFATLKQLFQKKGLTVTDLVILSGAHTIGVAHCGTFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADPSITVEMDPRSSRSFDSDYFKIVTQKKGLFQSDAALLTDASSSRTVKQLQNPRAFSSSFANSMLKMAAIEVLTGPNNGEIRQRCRFVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6171730 6174563 + ClG42_06g0054200.10 Clacu06g0542 251190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0542 329 Gene3D - 32 329 - -
Clacu06g0542 329 FunFam Peroxidase 167 307 - -
Clacu06g0542 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Clacu06g0542 329 CDD secretory_peroxidase 32 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu06g0542 329 FunFam Peroxidase 32 179 - -
Clacu06g0542 329 Pfam Peroxidase 49 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Clacu06g0542 329 PANTHER PEROXIDASE 25-RELATED 30 325 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu06g0542 329 ProSiteProfiles Plant heme peroxidase family profile. 28 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 Gene3D Peroxidase, domain 2 167 307 - -
Clacu06g0542 329 SUPERFAMILY Heme-dependent peroxidases 30 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0542 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0870 Clacu-Chr2:10519614 Clacu06g0542 Clacu-Chr6:6171730 1.10E-79 dispersed
Clacu06g0542 Clacu-Chr6:6171730 Clacu11g0924 Clacu-Chr11:8916384 1.90E-65 dispersed
Clacu06g0542 Clacu-Chr6:6171730 Clacu06g0544 Clacu-Chr6:6191283 2.00E-155 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0542 K00430 - csv:101215642 552.362