Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0544 ATGAGAGCTTCAAATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCATTACTCTTCTTGCTCTTCACGTCGTCAATGGAGATTTGATCAATAATTTCTATATGAAAAGCTGCCCCCAAGCTGAGAGAATCGTTCAAGACGTCACCTTTAGTCTCGTCCGAACCAATCCCAGCCTTAGCGCTCAACTCCTCAGACTTCACTACCACGACTGTTTCGTTCGAGGATGTGATGGATCAATTCTATTAGATACCGTTGGAACAAACCAATCAGAGAAGGATGCAAGGCCGAACCTATCCCTATTAGGGTTTGATGCCATTGACCAAATCAAGTCCGAGGTTGAGAAAGCTTGCAGTGGAGTTGTTTCCTGTGCTGATATTCTTGCCCTTGCTGCCCGCGACGCAGTTTCCTTTCCGTCCAAAAACCGGCCGCTCTGGCCAGTCTTAACCGGAAGAAGAGATGGAACAGTTTCACGATCATCAGAAGTTACCGGTAATATGCCGTCGCCGTTCTCCGATTTCGCCACTCTTAAGCAAATCTTCGAGAAGAAAGGCCTAACTGTGAGCGATATGGTGATTTTATCAGGTGCTCACACCATTGGAGTTGCTCATTGTGGCGCATTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAGATCCAAAATATGCAGATTTTCTTAGAACAAAATGTCCAAATCCAGCTGACTCTTCCATTACAGTTGAAATGGATCCAAAGAGTTCTCGTTCCTTTGATAGTGACTATTTCAAAATTCTCACACAAAAAAAGGGTTTGTTTCAATCCGATGCCGCGCTTCTCACCGACACTTCTTCGTCTCAAACCATCAAACAGTTGCAGAATCCAAAGACTTTCTTTTCTAGCTTTGCTAATTCCATGTTGAAGATGGGAGCCATTGAATTTCATGGTATCACACCCCTATCTAGGCAATTTTTTCATGGATTGTCGTCGTTGCTATGCCACGGCCACCCGCCCCAGACGGCCTCCACAGTTCCACTCTACTCAACTCCAATCGACATTTTCAGCAAGGCCATGTGTGTTGTTTATGAAGGGGTGGAGAAGTTTGTGATAGACATGGGAAAGCACAAGGTTGTAGTGATGGGGAAGTTTGATCCCCATAAAGTTATGAAGAAACTAAGAGAAAAGACAGGAAAAGCCGTTGAGATGGTGGTCGACAAAGGTTCAATGGTGAAAGATGCAACCGCTGCCAAGGATTCGGAGCGATCGGACCCGAATAATTCCAATCAGTTGATGATGTTAAATTGTTGCAAGGAGAGTGCTCAGTTGCTGGTTTTGTTCAGTGATGAGAATCCAAATGCTTGTTGCATTATGTAG 1368 44.66 MRASNHGFPLFSVLVFITLLALHVVNGDLINNFYMKSCPQAERIVQDVTFSLVRTNPSLSAQLLRLHYHDCFVRGCDGSILLDTVGTNQSEKDARPNLSLLGFDAIDQIKSEVEKACSGVVSCADILALAARDAVSFPSKNRPLWPVLTGRRDGTVSRSSEVTGNMPSPFSDFATLKQIFEKKGLTVSDMVILSGAHTIGVAHCGAFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADSSITVEMDPKSSRSFDSDYFKILTQKKGLFQSDAALLTDTSSSQTIKQLQNPKTFFSSFANSMLKMGAIEFHGITPLSRQFFHGLSSLLCHGHPPQTASTVPLYSTPIDIFSKAMCVVYEGVEKFVIDMGKHKVVVMGKFDPHKVMKKLREKTGKAVEMVVDKGSMVKDATAAKDSERSDPNNSNQLMMLNCCKESAQLLVLFSDENPNACCIM 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6191283 6196753 + ClG42_06g0054400.10 Clacu06g0544 251192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0544 455 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Clacu06g0544 455 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 Gene3D Peroxidase, domain 2 167 307 - -
Clacu06g0544 455 FunFam Peroxidase 167 307 - -
Clacu06g0544 455 FunFam Peroxidase 32 179 - -
Clacu06g0544 455 Gene3D - 346 403 - -
Clacu06g0544 455 CDD secretory_peroxidase 32 311 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu06g0544 455 Pfam Peroxidase 46 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 ProSiteProfiles Plant heme peroxidase family profile. 28 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 Gene3D - 32 312 - -
Clacu06g0544 455 PANTHER PEROXIDASE 25-RELATED 30 313 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu06g0544 455 SUPERFAMILY Heme-dependent peroxidases 29 312 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g0544 455 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0544 Clacu-Chr6:6191283 Clacu06g1198 Clacu-Chr6:22553553 3.30E-63 dispersed
Clacu06g0542 Clacu-Chr6:6171730 Clacu06g0544 Clacu-Chr6:6191283 2.00E-155 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0544 K00430 - csv:101215642 515.768