Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0555 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCGTTGGTTGGAGAATCCCAAGACTTTCGACAAGAGGTTCCTTACTATCTTCAAGATAAGAACACTGTGATAGAGAAATCATTGGAGTTGATTCCTGTTGCTTCGCACAACTATCATTTGGAATACTTGGTACTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACAAATATTCAAGGTAACCCAAATGCCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAGACTAATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCAGTACAAGCTTATAATTCAGCATTTTTGTCTACAAATGATGAGTTACATACAAGTGAGATTGATGATTCCATGAGTGGAACAACTGCAATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCTAATGTTGGGGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGGATAGTGTTCTTGCTAAGGACTTGTCTAATGATCAAACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTCTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGCGATGAAGAAAGTCAGGGCGGCGATCCGCCTCGACTGTGGGTTCAAAATGGATTGTATCCTGGAACTGCGTTTACTAGGAGCATTGGTGATAGTACTGCAGAGAAGATTGGTGTAAATGCTGTTCCGGAGGTTTTAGTTCTTCAGCTTAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTTCTTTCAAGTCAAACTGTTGTTGATATGGCATCGAGTTATGCAGATCCTCAAGATGCATGCACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGGACCGATGATATAACGATCATTGTTGTTCAAATCAAAGGCTTGACTAATTCAGGTGCTGAGAATCTGTCCAGCACTGGGCTTGAGACTGCTTCTTTGAGAATCGATTTCTCGGATCTACCTACTGAACCGCCGAACTCTCAACATGTTGATGTGACAAATCGGAACCCAGCAATCGAGGTTCCAGCACTGAATAATCAGACACCTTTATAA 1212 41.17 MGCIHTKCCCRYPKSLVGESQDFRQEVPYYLQDKNTVIEKSLELIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNIQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFLSTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGDSVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIVVQIKGLTNSGAENLSSTGLETASLRIDFSDLPTEPPNSQHVDVTNRNPAIEVPALNNQTPL 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6292837 6295093 - ClG42_06g0055500.10 Clacu06g0555 251203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0555 403 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Clacu06g0555 403 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Clacu06g0555 403 Pfam Protein phosphatase 2C 72 323 IPR001932 -
Clacu06g0555 403 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
Clacu06g0555 403 Gene3D - 49 347 IPR036457 -
Clacu06g0555 403 SMART PP2C_4 56 343 IPR001932 -
Clacu06g0555 403 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Clacu06g0555 403 CDD PP2Cc 71 345 IPR001932 -
Clacu06g0555 403 PANTHER PROTEIN PHOSPHATASE 60 344 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0555 Clacu-Chr6:6292837 Clacu11g1155 Clacu-Chr11:16443496 2.20E-26 dispersed
Clacu06g0961 Clacu-Chr6:13174916 Clacu06g0555 Clacu-Chr6:6292837 1.40E-26 transposed
Clacu05g0646 Clacu-Chr5:5375511 Clacu06g0555 Clacu-Chr6:6292837 1.10E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0555 - - - 0.0