Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0560 ATGCGAGGCCACGATTGGATCAATACTGCCCTTCCTGATGAGTTGATTGTTGAGATCTTTCGGTGCCTTGATTCGAAGCTCAGTCGCGATGCTTGTTCTCTCGTTTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGGACCACCCTACGAATCGGTGCTACTGGTAGCCCCGACCTCTTTGTTCAGCTCCTCGCTCGCCGTTTTGTCAATGTCAGAAATGTCCACATTGACGAGCGATTGGCGATTTCTTTTTCCCTTCATCCACGAAGAAGACGTCGCAAAGAAGCCATGCGCTTGCCATACCATGCAACTGATAATACTGGGGCTGAAGGTGCGTTGGAGTCTTCGTGTCTGTCAGATGCTGGGCTATTGGTTCTCTCCGTAGGTTTTCCAAACCTCGAGAAACTAAGCTTAATTTGGTGCTCTAATATTTCAAGTCACGGCTTGACAACCCTAGCTGAGAAGTGTAAATTTTTGAAGTCACTGGATCTACAGGGCTGCTATGTTGGGGACCAAGGTGTAGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATCTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGCATTAGCCCATGGTTGTGGGAAATCATTGAAAGCATTTGGTATTGCAGCTTGCGCCAAAATAACAGATGTCTCATTAGACGCTGTGGGTATGCACTGCACATATCTTGAGACCTTGTCGCTAGATTCAGAAGTTATCCACAACAAAGGGGTGCTGTCTGTAGCTCAAGGCTGCCCAAATCTGAAAGTTTTGAAGCTACAATGTACGAATGTCACAGACGAAGCATTGGTAGCTGTAGGCTCCTTATGTCCTTCTCTGGAACTATTGGCTTTATACAGCTTTCAAGAATTTACTGACAAGGGTTTACGTGCCATTGGGATAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATGGGCTTGGAAGCTGTTGCAGCTGGTTGTAAAGAACTAACACATCTTGAAGTGAACGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGCAAGATCTTGCCTCCAACTCACGGAATTGGCTTTGTTGTACTGCCAAAAGATTGCTAACTCCGGTCTTCTTGGAGTTGGTCAAAGTTGCAAGTTCTTACAAGCGCTTCACTTGGTAGATTGTTCAAAAATTGGAGATGAAGCAATATGTGGCATAGCCAAAGGATGCACAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGAATGCAGGAATCATAGCTATTGGCGAGAATTGCAAATTCCTCACGGATTTGAGCCTCAGATTTTGTGATAGGGTTGGTGATGAGGCACTTATTGCCATTGGTAAGGGTTGTTCCCTACATCAGCTGAATGTTAGTGGGTGCCATCGTATCGGTGACGAGGGAATTGCAGCCATTGCTAGAGGTTGTCCCCAATTGAGTTACTTAGATGTAAGCGTTCTCGAGAACTTAGGTGATATGGCAATGGCTGAGTTAGGGGAAGGCTGTCCCTTGCTCAAGGACGTGGTATTGTCTCACTGTCACCAGATAACCGATGCGGGTATAATGCATTTAGTGAAGTGGTGCACAATGCTCGAATCCTGTCACATGGTCTACTGTCCTGGTATTTCCGCAGCTGGGGTCGCCACTGTCGTTTCTAGCTGCCCCAGCATAAAGAAAATCCTTGTCGAGAAATGGAAGGTGAGTGAGAGAACGAAACGACGTGCTGGTTCAGTTATTTCCTACCTTTGCGTGGACCTCTAG 1809 46.27 MRGHDWINTALPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISFSLHPRRRRRKEAMRLPYHATDNTGAEGALESSCLSDAGLLVLSVGFPNLEKLSLIWCSNISSHGLTTLAEKCKFLKSLDLQGCYVGDQGVAAVGEFCKQLEDVNLRFCEGLTDTGLVALAHGCGKSLKAFGIAACAKITDVSLDAVGMHCTYLETLSLDSEVIHNKGVLSVAQGCPNLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLRAIGIGCKKLKNLTLSDCYFLSDMGLEAVAAGCKELTHLEVNGCHNIGTMGLESIARSCLQLTELALLYCQKIANSGLLGVGQSCKFLQALHLVDCSKIGDEAICGIAKGCTNLKKLHIRRCYEIGNAGIIAIGENCKFLTDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDEGIAAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDVVLSHCHQITDAGIMHLVKWCTMLESCHMVYCPGISAAGVATVVSSCPSIKKILVEKWKVSERTKRRAGSVISYLCVDL 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6329945 6335230 - ClG42_06g0056000.10 Clacu06g0560 251208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0560 602 SMART LRR_RI_2 157 187 - -
Clacu06g0560 602 SMART LRR_RI_2 260 290 - -
Clacu06g0560 602 SMART LRR_RI_2 466 494 - -
Clacu06g0560 602 Gene3D Ribonuclease Inhibitor 351 602 IPR032675 -
Clacu06g0560 602 SUPERFAMILY RNI-like 118 258 - -
Clacu06g0560 602 SUPERFAMILY RNI-like 233 580 - -
Clacu06g0560 602 CDD F-box_AtTIR1-like 10 47 - -
Clacu06g0560 602 PANTHER UNCHARACTERIZED 355 521 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Clacu06g0560 602 FunFam F-box/LRR-repeat protein 4 352 602 - -
Clacu06g0560 602 SUPERFAMILY F-box domain 10 42 IPR036047 GO:0005515(InterPro)
Clacu06g0560 602 Gene3D - 6 47 - -
Clacu06g0560 602 FunFam F-box/LRR-repeat protein 4 114 351 - -
Clacu06g0560 602 Gene3D Ribonuclease Inhibitor 113 350 IPR032675 -
Clacu06g0560 602 SMART LRR_CC_2 518 543 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 157 181 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 389 414 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 415 440 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 260 284 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 285 310 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 235 259 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 209 234 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 337 362 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 182 207 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 311 336 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 492 517 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 544 569 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 131 156 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 467 491 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 441 466 IPR006553 -
Clacu06g0560 602 SMART LRR_CC_2 363 388 IPR006553 -
Clacu06g0560 602 Pfam Leucine Rich repeat 441 463 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam Leucine Rich repeat 185 205 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam Leucine Rich repeat 467 489 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam Leucine Rich repeat 415 437 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam Leucine Rich repeat 260 281 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam Leucine Rich repeat 340 360 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam Leucine Rich repeat 156 178 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam Leucine Rich repeat 518 538 IPR001611 GO:0005515(InterPro)
Clacu06g0560 602 Pfam F-box 9 48 IPR041567 -
Clacu06g0560 602 FunFam F-box/LRR-repeat protein 4 8 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0560 K10268 - - csv:101216664 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2218 Clacu-Chr5:30728219 Clacu06g0560 Clacu-Chr6:6329945 7.80E-15 dispersed
Clacu06g0560 Clacu-Chr6:6329945 Clacu07g1679 Clacu-Chr7:31536204 1.10E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32