Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0566 ATGCAGGCCGATCAGAGAAGAAAGTCGTCTATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGACACTCACACTGGAGAGAAAGTTGCAATTAAGAAAATCAACGATATCTTTGAGCATGTCTCTGATGCAACTCGCATTCTCCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATCGTGGAGATAAAGCACATCCTTCTACCTCCATCTAGAAGGGAATTCAAGGACATTTATGTTGTGTTTGAGCTCATGGAATCTGATCTACATCAAGTTATCAAAGCAAATGATGATTTGACTCCAGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGAGGCTTGAAATACATACACACAGCCAATGTCTTCCACCGCGACCTAAAACCCAAAAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCACGCGTTGCGTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGCTGCATCTTTGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTCGTCCACCAATTAGATTTGATGACTGATTTTCTGGGAACCCCGAATGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATACTTAAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCGCTTGTTGGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTAAGGGAGCTTATTTACCGGGAGATTCTCGAGTATCATCCAAAGATGTTGAAGGAATTCTTAGATGGATCAGAACCCACTGGTTTCATGTATCCAAGTGCGGTCGACCATTTTAAGAAGCAATTTGCGTTCCTTGAGGAACACTATGGAAATGGTGCAACTGTCGCTCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAACATGGTGCAGAACTCGGCCCAAGTTGCGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTTGGCTAGAGTTCCTATTCAAGTTCCTCAATCTATTCAAGCAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCTCTGTGTTGCGATACAACTGTGGAGCAACAGCAGCAGCAGTAGCACCAGAAGTTCTTGAACAGCGGAGGATGACCAGAAACCCTTCCATTCCACCACAGTACGCTGCTAATAACTGTTCATATCCAAGAAGAAACTCATCCTGTAAAAATGAAAGAACTGATGATGAAGCCATTGAAGGTCCAAACGGTTTGCAGGCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1701 42.97 MQADQRRKSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNMVQNSAQVANDLSKCSIKEVERPQVDRTCNIPLARVPIQVPQSIQAGNGARPGKVVGSVLRYNCGATAAAVAPEVLEQRRMTRNPSIPPQYAANNCSYPRRNSSCKNERTDDEAIEGPNGLQAKPQYIARKVAAAQGGPGNNWY 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6377019 6381855 - ClG42_06g0056600.10 Clacu06g0566 251214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0566 566 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Clacu06g0566 566 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Clacu06g0566 566 FunFam Mitogen-activated protein kinase 15 119 - -
Clacu06g0566 566 MobiDBLite consensus disorder prediction 507 525 - -
Clacu06g0566 566 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0566 566 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Clacu06g0566 566 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0566 566 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Clacu06g0566 566 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0566 566 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0566 566 MobiDBLite consensus disorder prediction 507 544 - -
Clacu06g0566 566 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu06g0566 566 FunFam Mitogen-activated protein kinase 111 339 - -
Clacu06g0566 566 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1123 Clacu-Chr4:25509285 Clacu06g0566 Clacu-Chr6:6377019 4.60E-186 dispersed
Clacu06g0566 Clacu-Chr6:6377019 Clacu06g1542 Clacu-Chr6:26356467 1.80E-207 dispersed
Clacu06g0566 Clacu-Chr6:6377019 Clacu02g1884 Clacu-Chr2:32334070 2.40E-212 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73630 PF00069 Pkinase 5.30E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0566 - - - 0.0