Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0585 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTAGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTCGAGAAGATCGGTTCTAGCATCCGTAAATCTCGAAATGGACTGTTTTCTAAACAGTCACTGCGGGCTCTGCCTCCGGTTGCGAAGGAAGATGCACCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGTGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGCTGGAGGAGGAAGTGAGGCTTTTGAAGAATCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCAAGAGAAGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCTTCTTTGTTAGGGAAATTTGGGTCTTTCCCCGAGTCTGTTATAAAGACCTACACTAAGCAGCTATTATTGGGGCTTGAGTACCTTCATAAGAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTCGCTGCTCTTTTCCATATAGGAAATACTAAGTCCCATCCGCCCATTCCTGAGAATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGATTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGAACCTGTTGCAGTAGTCCTTGCCTCTTCTGTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAACTCCAATGATCTTAAAAAGTCTACAATCCAACGTTCAACCTGTGAGGGCTTGAAAGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACAGTCCAACTGGGGCTCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGTTAGTTCATCAATTAAGTACAAATCTATTTTATCATCAACTGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCGTTCAAACTGGCAAGGGGAGTGACTTCACTTTTCCTTGTGGTCAATCAGCAGCTGAGGATGATGAAGAGGTTACGGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAACTAAAGAAGCTGCAAACACCTTTATACGAAGAGTTCCGTAGCACAGTTAATGCAGCTAATGCATTAGGAACAGTTGGAATTGAGAATATCAAGAGCGTGTCTAAGTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCTGGCATATTGCAAGATCGAGCTTTGCAGGAAATTCAGTCGCCACAACTTGGGGAATGGAACAACTTACTTCAAACCCAGCCAGACTCTTCTACACCAAGTTTCTCTGAAAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAACGAGAAATGATGCGGAGAGGAATTGTAGGAGCAATTCACTAA 1911 43.43 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPENLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPVAVVLASSVESGKQMADSRLNSNDLKKSTIQRSTCEGLKDICEMGSLRCSSVFSGNYGSQSNWGSSNFEDDMCQIDDKDLFVSSSIKYKSILSSTDLNKSFNPMCEPTDDLDESSELGGNLMELSGVQTGKGSDFTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANALGTVGIENIKSVSKFLKLPPKCGSPSKLRGKRLSSIDAGNCSSRQSRIKQAGILQDRALQEIQSPQLGEWNNLLQTQPDSSTPSFSERQRKWKEELEEELKRKREMMRRGIVGAIH 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6673429 6678131 + ClG42_06g0058500.10 Clacu06g0585 251233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0585 636 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0585 636 Gene3D Transferase(Phosphotransferase) domain 1 65 368 - -
Clacu06g0585 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 329 IPR050538 -
Clacu06g0585 636 FunFam Serine/threonine-protein kinase STE11 62 155 - -
Clacu06g0585 636 CDD STKc_MAPKKK 65 327 - -
Clacu06g0585 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0585 636 SMART serkin_6 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0585 636 MobiDBLite consensus disorder prediction 593 612 - -
Clacu06g0585 636 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0585 636 Coils Coil 606 629 - -
Clacu06g0585 636 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524(InterPro)
Clacu06g0585 636 Coils Coil 98 125 - -
Clacu06g0585 636 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Clacu06g0585 636 FunFam Mitogen-activated protein kinase kinase kinase 2 64 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0585 Clacu-Chr6:6673429 Clacu08g1718 Clacu-Chr8:26694640 5.20E-59 dispersed
Clacu06g0585 Clacu-Chr6:6673429 Clacu02g1622 Clacu-Chr2:29663842 1.80E-208 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73631 PF00069 Pkinase 3.30E-73 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0585 K20606 - csv:101217427 1202.58