Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0587 ATGGAAAATTTTGATTTAGAGCAATGTGGGAGTTGCGACCATTTCAAAGCGACCTTCTCGCGAAAACCCCAGGGCCAGGCAAATCTGTTTCCTCACAGGGGAGAGAGAGCGATGACGATGGCGATACCAGGGAGCATTGTCGTTGTTCTTCTCCTTATGTTGCTTCTCATCATCCTCCTCCTCCTCATTGCCTGCAAACCATGGCGTTTCTTTTCCTATTCCCGTTCTCGCACAATCAAGGTTCCTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCAGATGTCACTCAAAACCAATTCAGTGAGGTTCCCAGAGATTATGATCTGGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCCCCGAGATTACATGGACTGATTCATAAACAAAGACTGCCACCTTTGTCTCCCCATTCAAGTCAGGGTGATAGATTGGTTCCAGATGTAGTTCCCGATCCTTTGGAAGTTATTTCAGTTGGTCAAACCCTTAAACGTACTTACTTTGCTAACCAGATTCCAGAAGTTCAAAAGCATGCAAAACTGAGCCTAGGAAGTGATCAACTCCACGAAATTGCAAGTCAAGATATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTCACCTCCGGTCCTTCTCGTGGAGTGCGTTATTCAATTCATTCTGCAAACACGTCTAGGCTTCCTTTGACTCTTGGAAGAGTACCTCCTAGTGATTTACAGTTGAAGGATTCCGAAGTCTCAGGGAAGCATGCCTTGATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCAATCAACAATCCTGATTCTGGAAGTAGACATTGGGGTGACCCAGTTGAGCTTACGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACATCTCAGATTGAGAACCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGTGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCATTGGCCTCTTCCTGGGGTTGCTCAGTTTGGACTCTTTGGTATCTGCGATGGGCATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGGAGAAGGTTGCCAAAATTCTATCTGATCCACTGAAAAGGGAGACGGTAGTATCTCTTCGTGATGCTACAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAGGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTGATAGTGAGGAAAATTACTTTGTGCAATGTGCGAACGTTGGGGACTCTGCTTGTGTTCTCAATGTTCATGGGAAGCAGATGAAGATGACAGAAGATCACAGAATAACTAGCTATTCAGAGAGACTCCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGAGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACCATCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGTGTGAAGAAGGCAATTCAGCTGGTTCTTCAGGCTAGGGAGAAATACTCCACAAGTGCAGAAAATTCAGCCGAAAAGGTTGCGAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTCATAGAATCACTTGTAAAGTTGAACCATAA 1833 43.75 MENFDLEQCGSCDHFKATFSRKPQGQANLFPHRGERAMTMAIPGSIVVVLLLMLLLIILLLLIACKPWRFFSYSRSRTIKVPDLERPLVSDAADVTQNQFSEVPRDYDLEGALQTDGHFRSPRLHGLIHKQRLPPLSPHSSQGDRLVPDVVPDPLEVISVGQTLKRTYFANQIPEVQKHAKLSLGSDQLHEIASQDISHGRSYLTLEVTSGPSRGVRYSIHSANTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLNNMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGDPVELTSGDVITLGTTSKVYVHITSQIENHIPFGVGLASDPMALRRGGKKLAMEDVCYYHWPLPGVAQFGLFGICDGHSGVGAAKSASEILPEKVAKILSDPLKRETVVSLRDATDVLREAFSQTEACMNHYYEGCTATVLLVWADSEENYFVQCANVGDSACVLNVHGKQMKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAIQLVLQAREKYSTSAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEVSHRITCKVEP 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6711274 6717337 + ClG42_06g0058700.10 Clacu06g0587 251235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0587 610 PANTHER PROTEIN PHOSPHATASE 2C 339 598 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Clacu06g0587 610 ProSiteProfiles Forkhead-associated (FHA) domain profile. 230 281 IPR000253 GO:0005515(InterPro)
Clacu06g0587 610 CDD PP2Cc 338 598 IPR001932 -
Clacu06g0587 610 ProSiteProfiles PPM-type phosphatase domain profile. 326 598 IPR001932 -
Clacu06g0587 610 Pfam Protein phosphatase 2C 337 591 IPR001932 -
Clacu06g0587 610 SUPERFAMILY SMAD/FHA domain 203 314 IPR008984 GO:0005515(InterPro)
Clacu06g0587 610 Gene3D - 333 601 IPR036457 -
Clacu06g0587 610 CDD FHA_PP2C70-like 204 314 - -
Clacu06g0587 610 FunFam Protein phosphatase 2C 70 334 605 - -
Clacu06g0587 610 FunFam Protein phosphatase 2C 70 199 333 - -
Clacu06g0587 610 SUPERFAMILY PP2C-like 339 598 IPR036457 -
Clacu06g0587 610 SMART FHA_2 229 281 IPR000253 GO:0005515(InterPro)
Clacu06g0587 610 Pfam FHA domain 231 306 IPR000253 GO:0005515(InterPro)
Clacu06g0587 610 SMART PP2C_4 320 596 IPR001932 -
Clacu06g0587 610 Gene3D - 198 332 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0587 K01090 - csv:101217195 1036.17