Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0601 ATGGCTTCTTCTTTCGACTGCCTCATTTTCGACTTAGATGATACTCTGTACCCATTCAACACTGGAATTGCTGCTGCTTGCAAGAAAAACATTGAAGATTTTCTCATCGAGAAATGTGGATTCCCAAAAACCCAAGCTCCCATTCTTCGAACAGAGCTTTTTAAAACATACGGCAGCACCCTGGCTGGTTTGCGAGCATTGGGCTATGACATCAAAGCCGATGATTACCATGGTTTCGTGCACGGGAGGTTGCCGTACGATCGGATCAAACAAGACTTTCAGCTCCGGCGCCTCTTACTCACCATTCCTCAAAGAAAAATCATATTCACAAACTCCGATATGAATCACGCAACTGAAGTGCTGGGCCGACTCGGTTTAGAGGATTGTTTTGAGAAGATCATATGTTTCGAGACGATGAACCCAAATCTCCCAAAGGCGACTCGGCTGAACGAGTTTCCGATCCTTTTGAAGCCATCAATGGACGCCATGAGAATCGCTCTTGACGTCGCCGATGTTGACCCCCGTCGCACTTTGTTTCTTGACGACAACGTCCGCAACATCGCTGCCGGAAAAGCCCTCGGCCTCCGTACCGTTTTGGTGGGGAAGACAGTGAAAAGTAAGGAGGCAGATTACGTGGTGGAGACTGTGCATAATCTGGTACAAGCAATTCCAGAGATATGGGTGAACAAAGAATCGAACGGTAATGATGAAATGATCAATCGAAGCCGAAATGACGTAGATTCCGTTCTCATGGCAACACCCGTGGGCGCTTAA 774 47.42 MASSFDCLIFDLDDTLYPFNTGIAAACKKNIEDFLIEKCGFPKTQAPILRTELFKTYGSTLAGLRALGYDIKADDYHGFVHGRLPYDRIKQDFQLRRLLLTIPQRKIIFTNSDMNHATEVLGRLGLEDCFEKIICFETMNPNLPKATRLNEFPILLKPSMDAMRIALDVADVDPRRTLFLDDNVRNIAAGKALGLRTVLVGKTVKSKEADYVVETVHNLVQAIPEIWVNKESNGNDEMINRSRNDVDSVLMATPVGA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6904456 6907698 - ClG42_06g0060100.10 Clacu06g0601 251249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0601 257 Gene3D - 3 89 - -
Clacu06g0601 257 Pfam haloacid dehalogenase-like hydrolase 6 194 - -
Clacu06g0601 257 SFLD C1.5.3: 5'-Nucleotidase Like 3 227 IPR010237 -
Clacu06g0601 257 SFLD Haloacid Dehalogenase 3 227 - -
Clacu06g0601 257 SUPERFAMILY HAD-like 5 227 IPR036412 -
Clacu06g0601 257 NCBIfam pyrimidine 5'-nucleotidase 6 200 IPR010237 -
Clacu06g0601 257 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 4 248 - -
Clacu06g0601 257 NCBIfam HAD-IA family hydrolase 123 200 IPR006439 -
Clacu06g0601 257 Gene3D - 94 234 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0601 K07025 - - csv:101214793 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0136 Clacu-Chr3:1488926 Clacu06g0601 Clacu-Chr6:6904456 2.20E-64 dispersed
Clacu04g0857 Clacu-Chr4:22904867 Clacu06g0601 Clacu-Chr6:6904456 5.60E-69 dispersed
Clacu06g0601 Clacu-Chr6:6904456 Clacu10g2089 Clacu-Chr10:34223260 1.20E-67 dispersed
Clacu06g0601 Clacu-Chr6:6904456 Clacu06g0602 Clacu-Chr6:6917738 2.30E-106 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g478 . . Bda03g00891 . Bpe04g00835 . Bma04g00789 . Cmo08g01123 Cmo17g00228 . . . . . . . . . . . . . . Cla06g00575 Cam06g0614 Cec06g0615 Cco06g0621 Clacu06g0601 Cmu06g0594 Cre06g1362 Cone14ag0844 . . . . . . . . . . . . . . . . . . . Cma17g00241 Car08g01029 Car17g00218 Cpe12g00202 Cpe17g00144 Bhi12g01720 . . . . . . . . . . . . . Lsi09g01328 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003737 1 2 0 1 1 2 2 2 2 1 2 2 1 1 1 2 2 1 2 2 1 1 1 1 1 2 1 6 1 1 46