Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0605 ATGGCCATTTCAGTTCGAGTAATATTTCTTCTCCTCCTTTGCTCTTTCATCCCTTCCATAGTTTCTTATCACCCTTTAGACCCTCTTTCACCAAATGAAATACAGGCAGCTGCCGCCATTATCAAAGCTTCCAAGCTCGGCCAATCGTCCAGGCTCACGTTCCACTACGTCGGCTTAGACGAGCCGAGCAAACCCGCCGTCCTTGCATGGCTATCAAACCCTTACAAACATCAACCGCTGCCTCGTCGGGCTTTCGCCATAGTCAGAGCCAACGGCCAAAGTCATGAACTCGTCGTTGACTTGAACACCAATCTTACCATCTCCTACAAAATCTACACAGGCACGGGTTATCCAATGCTAAATTTAGAGGAGCAAGAAACAGCGATCGAACTTGCAGTTAAACACCCGGCTGCAGTCGCATCGATAAAGAAGAGGGGGCTAAAAATTTCAGAGGTGGTGGCTTCAACTTTCACCATAGGATGGTATGGGGAAGAGAAGACGAAGAGAGTGATTAAGGTATTGTATTTTTACAAAGAAGGGTCTCCCAATATTTGGGTGAGGCCCATTGAAGGGATTGAAGCTCTTGTGGATCTCGATATATTGAAGGTTGTTGAGTATAGAGATCGCCATATTTTTCCTGTTCCTAAAGCTCAGGCCACTGATTACAGAGCCTCTATGGTTAAGCCGCCGTACGTGGCGGAGACGAAGCCCATCACTCTTTACCAACCGGATGGCCCTACCTTCAACGTTATTGGCCATGAAATAAGGTGGGCAAACTGGGAATTTCACATGAGCTTCGACATTCGAGTAGGAATTATAATATCATCAGCATCGATCGCCGACATTGACCAACGTCGGCGACGACAAGTGCTATATAAAGCCCAAATCTCAGAGCTCTTTGTCCCTTACCAAGACCCAACCGAGGAATGGTTTTACCGGACATTTTTCGACGCCGGCGAGTTTGGATTGGGCCTTTCTGCCGTCGAGCTCGAACCCTTCACTGATTGTCCTGCAAACGCCGTGTTTTTCGATGGCTTCTACGCCGGACAAGATGGACTTCCCGTCAAAATTCCTAATGTTGTTTGCGTCTTCGAGAAGTACGCTGGCGGCGTTGCTTGGCGTCACACTGAACTCGAAATTCCTGGTGAAGACATTAGAGAAGTGCGACGAGATGTGAGCTTAGTGATAAGGATGGTTTCTATGGTGGGAAACTATGACTATATCTTTGATTGGGAGTTCAAGACAAGTGGTTCTATCAAATTTAAGGTAGGGTTAACAGGCATTCTAGAAGGGAAGTCCACAATGTACACTCGCACAAAGGATATCAAAGAAGACATATTTGGCACTTTAGTAGCACCAAACACAGTGGCTGTAAACCATGACCATTTCCTCACTTATTATTTAGATCTCGACATTGACGGTCAACAAAACTCCTTCCTCAAAGCCAAATTAAAGAAGAAGAAGAACCACCGCGATACGCTGAGGAAGAGCTACTGGACCGTCGTGAAGGAGACGGCCAAAACAGAACTCGACGCCAGACTCCGGCTAATGGAGCCAGCTGAGTATTTGATTGTCAATCAAAATAAAGAGACTGAGGTTGGTAACCAAGTTGGGTACCGGCTGATTCCAGGGCCTGATGCTTCACCACTGCTGGCGGCAAATGATTACCCGCAGATCCGAGGAGCCTTGTCTGATTATAACATCTGGGTTACTCCTTATAATAGATCTGAGATTTGGGCTGGTGGACTTTATTCTGATCGGAGCCGAGGTGATGACACTCTAGAAATTTGGACGGATAGGAATAGGGATATCTACAACAAGGACATAGTTTTATGGCACACCATTGGATTTCATCATAACCCTGTTCAAGAGGAATTTCCAATAATGCCCACACTTACCGGTGGCTTCGAACTCCGGCCGGCAAATTTCTTCGACCGGAATCCCATATTGCTCATGAGGGCTCCGGAGGCTGTCAAGGTTCCGCCGCCTTGCAACGTCACCGTTCCCTAA 2010 47.01 MAISVRVIFLLLLCSFIPSIVSYHPLDPLSPNEIQAAAAIIKASKLGQSSRLTFHYVGLDEPSKPAVLAWLSNPYKHQPLPRRAFAIVRANGQSHELVVDLNTNLTISYKIYTGTGYPMLNLEEQETAIELAVKHPAAVASIKKRGLKISEVVASTFTIGWYGEEKTKRVIKVLYFYKEGSPNIWVRPIEGIEALVDLDILKVVEYRDRHIFPVPKAQATDYRASMVKPPYVAETKPITLYQPDGPTFNVIGHEIRWANWEFHMSFDIRVGIIISSASIADIDQRRRRQVLYKAQISELFVPYQDPTEEWFYRTFFDAGEFGLGLSAVELEPFTDCPANAVFFDGFYAGQDGLPVKIPNVVCVFEKYAGGVAWRHTELEIPGEDIREVRRDVSLVIRMVSMVGNYDYIFDWEFKTSGSIKFKVGLTGILEGKSTMYTRTKDIKEDIFGTLVAPNTVAVNHDHFLTYYLDLDIDGQQNSFLKAKLKKKKNHRDTLRKSYWTVVKETAKTELDARLRLMEPAEYLIVNQNKETEVGNQVGYRLIPGPDASPLLAANDYPQIRGALSDYNIWVTPYNRSEIWAGGLYSDRSRGDDTLEIWTDRNRDIYNKDIVLWHTIGFHHNPVQEEFPIMPTLTGGFELRPANFFDRNPILLMRAPEAVKVPPPCNVTVP 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6968989 6975904 + ClG42_06g0060500.10 Clacu06g0605 251253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0605 669 Gene3D - 23 118 - -
Clacu06g0605 669 FunFam Amine oxidase 22 118 - -
Clacu06g0605 669 Pfam Copper amine oxidase, enzyme domain 239 649 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Clacu06g0605 669 SUPERFAMILY Amine oxidase catalytic domain 226 650 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Clacu06g0605 669 Gene3D Copper amine oxidase, catalytic domain 230 660 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Clacu06g0605 669 SUPERFAMILY Amine oxidase N-terminal region 23 113 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Clacu06g0605 669 Pfam Copper amine oxidase, N2 domain 24 105 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Clacu06g0605 669 PANTHER COPPER AMINE OXIDASE 22 653 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Clacu06g0605 669 Gene3D - 119 212 - -
Clacu06g0605 669 FunFam Amine oxidase 248 661 - -
Clacu06g0605 669 Pfam Copper amine oxidase, N3 domain 118 214 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Clacu06g0605 669 SUPERFAMILY Amine oxidase N-terminal region 116 223 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0605 K00276 - - csv:101222468 852.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0372 Clacu-Chr1:3751479 Clacu06g0605 Clacu-Chr6:6968989 5.30E-153 dispersed
Clacu01g0373 Clacu-Chr1:3760708 Clacu06g0605 Clacu-Chr6:6968989 4.80E-149 dispersed
Clacu06g0603 Clacu-Chr6:6936698 Clacu06g0605 Clacu-Chr6:6968989 2.90E-254 proximal
Clacu06g0605 Clacu-Chr6:6968989 Clacu06g0606 Clacu-Chr6:6978507 1.80E-198 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97