Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g0606 | ATGGCAAAACTTCTCTACTTCCTCCCACTCATCATTTATCTTTTCTCCGCCGTCCCCGTGGCCGCCGACCGCCACCCTCTCGACCCACTCTCTCCGCCCGAGTTCAAACTCATCCGATCACTCATTATCAATTCCAACCCCTCCACCAACTTCACCTTCCAGTACGTAGCCCTCGCCGACCCCACCAAGCAATCCGTCCTTTCATGGCTCTCAAACCCCAAAACTCCGCCGCCTCCCCGCCGCGCCATCGCCACCGTCCGTTTCAACAAAGCCACACACGAGATCCTCATAGACCTACACAAAAAAACCGTAATATCGAACCGGGTCTACTCCGGTCCGGGGTACGCGCCGTACACATTCGAGGAGCAGTTCGCGGCCGCCGCTCTGCCGCCATCCCACCCACCGTTCGTGGCGGCGATGAAAAAAAGAGGGCTGAAAATGGAAGAGGTAGTTTGTGCGTGTTTTAGCGTTGGATGGTTTGGGGAAAAAAGGAAAGTGGAGAAGAGGATTGCGAAAGTACAGTGCTATTATTTGGATGGGAGTGTGAATCTGTACATGAGGCCTGTGGAAGGAGTGACGGTGACCGTTGATCTTGATGAGATGAAGATTCTTGGGTTTCGTGATAGATATGTGGTTCCAATTCCCAAGGTGGACGGGACTGAGTACAGAGAATCAAAGCTCAATCCGCCGTTTTTGCCGCCTTTGAACGGAATTAAGATGCTGCAGCCCGACGGCCCTAGCTTCAAAGTCAATGCCCACTCCATTAGTTGGGCGAACTGGAATTTACACGTAAGCTTGGATGAGAGAGCAGGGCCAATGATATCGCTAGCATCCATCTATGACATGGAAAAGAAAGAACACCGGCAAAATGGTACTACCGGACGTTTTTTCGACGCCGGCGAGTACGGCTTCGGCCAATGTGCAGTGCCGTTACAGCCGCTGAGAGACTGCCCGGAAAATGCGGTGTTTATGGACACGTACATGGCCGCCGGAGATGGCAGGCCGGTGAAGATGCCCAACACTTTTTGTATATTTGAGCGCCACGCCGGTGATATCATGTGGCGCCACACGGAGGGCACCATTCCCAATACACTTATTAGCGAGACGAGGGCGGAAGTGAGCTTAGTGGTGAGGATGGTGGCAGCTGTGGGCAACTATGACTACATTGTTGACTGGGAATTTAAGCAGAGTGGCTCCATTATTGCTAATGTTGGGTTAACTGGTTTGCTAGAAGTTAGGGCATCAAAGTACACTCACAATGACCAAATAAAGGAGGAAGTCTACGGCCCTTTGTTAGCCGAGAATACGATCGGCGTCCGCCATGATCACTTCCTCATCTACCATCTCGATCTCGACATCGACGGCGGCGCCAACTCCTTCGTCAAATCCAACCTCCGCACTGTCCGATCGCCGGACCCGGATTCCCCTAGGCGTAGCTATTGGACGGTCGTCGCCGAGACGGCCAAAACAGAGGCCGATGCGAGGATCAAATTCGGCCTCCAGGAGGCCGAATTGGCAGTCGTTAATCCCAATCGGAGGACCAGAATGGGGAATCCCGTCGGCTACCGTCTGATTCCGAAGTCGGCGGCGGGTCCTCTTTTGAGTGCTGATGATTACCCTCAAATTAGGGGAGCGTTCTCCAATTACAATGTCTGGGTTACACCGTATAATAGCTCCGAGAAATGGGCTTCTGGACTCTTCACTGATCAGAGCCGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGGGACAGGGAGATAGAGAACAAGGACATAGTCATGTGTCACCCCACCCCAGTCCTTCACCTTCATTTCTGTACGGCGGCGCCGCCCTTTTTCCATCCGCTTGACCCTCTAAACCCGGTGGAGCTTGACCAAATTAGGCTCGCAGTACAGAAATCCCACCTTGGAAAGCTTCCAAATCTCACATTTCACTTCGTTGACTTGGAAGAACCAGATAAGAAGGATGTTCTTTCCTGGCTTTCTTCCGGTGAAGAAAACAACCCCCTCCACCGCCTGCCTCGCCATGGCAAGGTTGTGGTCCGGGCGGCGGATTCCACCCACGAGCTACTTGTAGACCTTGCCACACGCTCGGTTAAGTCTGACCAAGTCTATAGTGGCCTTGGCTATCCTCCTCTCACTTTCGTGGAGCTTGTCCAAGCCAGCAAATTGCCTCTCAATTTCCCCAATTTCAAGGATTCCATTCAGAGGAGAGGCTTGAACTTGTCTCATGTTTCTTGCATCCCGTTTACAGTAGGCTGGTACGGCGAAAAAACAACCAAAAGGCTTCTAAAAGTTGCGTGCTTTTACAGAGAAGGAACCATCAATGTGTTCTCCAGGCCAATCGAAGGCATCATCACACTAATCGACGTTGATTCCATGAAAATCATCAACTACTCCGACAGATTCACCGCCCCTTTGCCGCAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCCCAAATCTTCCAATTGCAAGGCGGCGAAAAGAAGATTCACCATCGAAGGCCATCAAGTGAAATGGGAAAACTGGGTCTTCCATGTGGGATTCAACGCCAGAGCCGGAATTATTATCTCAACAGCCTCCATTTTCGACGATGAAAAGAAGAAATTCAGACGAGTGCTTTACAGAGGACACATTTCAGAGACGTTTGTGCCGTATATGGATCCGACGAACGAATGGTACTTCAGAACCTTTATGGACATCGGAGAGTTTGGATTTGGGCGGGCGGCGGACACTCTGCAGCCGCTGGTTGACTGTCCGGAAACTGCCGAGTATCTAGACGGCTACATGGCCGGCGCCGACGGGCGACCGCAGAAAGTATCGAGAGCCATTTGTATCTTTGAACGCCATTCAGGAGATGTCTTATGGAGGCATACCGAGATTAATATTCCTGGAAAAGTGATTAGACGTGGGGAACCTGAGATTAGTTTGGTGGTTAGGATGGTAGCAACTGTTGGGAATTATGATTATGTTCTTGACTGGGAATTCAAAAGAAGTGGCTCTATTAAAATGGGGGTTGCTTTAACAGGGCTTTTGGAGGTTAAAGCCACACCGTACAGAAATACCATGGATGTAACCCAACAAACATACGGAACTTTAATCGCCGACAACACAATCGCCGTCAACCACGACCACTACCTAACCTACTACCTCGACCTCGACGTTGACGGCACCGCCAACTCCTTCGTCAAAGCCAAGCTGATAACGGCAACAACGGCGAACGTCAACGCCACGTCACCCAGGAAAAGTTACTGGAAAATTATCCGAGAAACCATTGAAACCGAAACTGAAGCTAAACTTCAGCTCGGCTCCGGCCCAGCTGAGCTCTTGTTCGTAAACCCCAATAAGAAGACAAAGATTGGGAATCCGGTTGGTTACCGGCTCATCACCGGCCAACCGGTTAATTCTTTATTGGCCGACGATGATTACCCTCAGATCAGAGCGGCTTACACCAAGTACCCGTTGTGGGTGACTCCTTATAACAAGTCGGAGAGATGGCCGGCTGGATTTTACGCCGATCGGAGCCGTGGTGATGATGGCTTAGCCGTCTGGGCCAAAAGGAATAGAAGAATTGATAATAGAGATATAGTTTTATGGTACACGGTGGGTTTCCATCACAGCCCTTGCCAGGAAGAATTCCCGGCAATGGCCGCCCTCCACGGCGGCTTCGAGCTCCGACCAGCCAATTATTTTGATAGAAACCCTATCCTTAAATGA | 3726 | 50.89 | MAKLLYFLPLIIYLFSAVPVAADRHPLDPLSPPEFKLIRSLIINSNPSTNFTFQYVALADPTKQSVLSWLSNPKTPPPPRRAIATVRFNKATHEILIDLHKKTVISNRVYSGPGYAPYTFEEQFAAAALPPSHPPFVAAMKKRGLKMEEVVCACFSVGWFGEKRKVEKRIAKVQCYYLDGSVNLYMRPVEGVTVTVDLDEMKILGFRDRYVVPIPKVDGTEYRESKLNPPFLPPLNGIKMLQPDGPSFKVNAHSISWANWNLHVSLDERAGPMISLASIYDMEKKEHRQNGTTGRFFDAGEYGFGQCAVPLQPLRDCPENAVFMDTYMAAGDGRPVKMPNTFCIFERHAGDIMWRHTEGTIPNTLISETRAEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHNDQIKEEVYGPLLAENTIGVRHDHFLIYHLDLDIDGGANSFVKSNLRTVRSPDPDSPRRSYWTVVAETAKTEADARIKFGLQEAELAVVNPNRRTRMGNPVGYRLIPKSAAGPLLSADDYPQIRGAFSNYNVWVTPYNSSEKWASGLFTDQSRGDDTLATWSLRDREIENKDIVMCHPTPVLHLHFCTAAPPFFHPLDPLNPVELDQIRLAVQKSHLGKLPNLTFHFVDLEEPDKKDVLSWLSSGEENNPLHRLPRHGKVVVRAADSTHELLVDLATRSVKSDQVYSGLGYPPLTFVELVQASKLPLNFPNFKDSIQRRGLNLSHVSCIPFTVGWYGEKTTKRLLKVACFYREGTINVFSRPIEGIITLIDVDSMKIINYSDRFTAPLPQSEGTDYQSKKTEPKSSNCKAAKRRFTIEGHQVKWENWVFHVGFNARAGIIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRAADTLQPLVDCPETAEYLDGYMAGADGRPQKVSRAICIFERHSGDVLWRHTEINIPGKVIRRGEPEISLVVRMVATVGNYDYVLDWEFKRSGSIKMGVALTGLLEVKATPYRNTMDVTQQTYGTLIADNTIAVNHDHYLTYYLDLDVDGTANSFVKAKLITATTANVNATSPRKSYWKIIRETIETETEAKLQLGSGPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPAGFYADRSRGDDGLAVWAKRNRRIDNRDIVLWYTVGFHHSPCQEEFPAMAALHGGFELRPANYFDRNPILK | 1241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6978507 | 6991374 | - | ClG42_06g0060600.10 | Clacu06g0606 | 251254 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g0606 | 1241 | Pfam | Copper amine oxidase, N2 domain | 614 | 703 | IPR015800 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | Pfam | Copper amine oxidase, N2 domain | 25 | 109 | IPR015800 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | ProSitePatterns | Copper amine oxidase topaquinone signature. | 980 | 993 | IPR049948 | - | |
| Clacu06g0606 | 1241 | SUPERFAMILY | Amine oxidase N-terminal region | 612 | 708 | IPR016182 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | PANTHER | COPPER AMINE OXIDASE | 613 | 1241 | IPR000269 | GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | SUPERFAMILY | Amine oxidase catalytic domain | 226 | 610 | IPR036460 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | SUPERFAMILY | Amine oxidase N-terminal region | 709 | 815 | IPR016182 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | FunFam | Amine oxidase | 712 | 805 | - | - | |
| Clacu06g0606 | 1241 | SUPERFAMILY | Amine oxidase N-terminal region | 24 | 112 | IPR016182 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | Pfam | Copper amine oxidase, N3 domain | 711 | 803 | IPR015802 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | Pfam | Copper amine oxidase, N3 domain | 118 | 214 | IPR015802 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | Gene3D | - | 713 | 805 | - | - | |
| Clacu06g0606 | 1241 | Gene3D | - | 118 | 213 | - | - | |
| Clacu06g0606 | 1241 | Gene3D | Copper amine oxidase, catalytic domain | 834 | 1241 | IPR036460 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | Gene3D | Copper amine oxidase, catalytic domain | 248 | 606 | IPR036460 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | FunFam | Amine oxidase | 612 | 711 | - | - | |
| Clacu06g0606 | 1241 | FunFam | Amine oxidase | 118 | 212 | - | - | |
| Clacu06g0606 | 1241 | Pfam | Copper amine oxidase, enzyme domain | 832 | 1239 | IPR015798 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | Pfam | Copper amine oxidase, enzyme domain | 239 | 603 | IPR015798 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | Gene3D | - | 23 | 116 | - | - | |
| Clacu06g0606 | 1241 | Gene3D | - | 613 | 711 | - | - | |
| Clacu06g0606 | 1241 | FunFam | Amine oxidase | 834 | 1241 | - | - | |
| Clacu06g0606 | 1241 | SUPERFAMILY | Amine oxidase catalytic domain | 831 | 1240 | IPR036460 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) | |
| Clacu06g0606 | 1241 | SUPERFAMILY | Amine oxidase N-terminal region | 114 | 223 | IPR016182 | GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g0606 | K00276 | - | - | csv:101222232 | 1202.96 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g0603 | Clacu-Chr6:6936698 | Clacu06g0606 | Clacu-Chr6:6978507 | 7.60E-194 | dispersed | |
| Clacu06g0606 | Clacu-Chr6:6978507 | Clacu06g1836 | Clacu-Chr6:28896952 | 3.40E-54 | dispersed | |
| Clacu06g0605 | Clacu-Chr6:6968989 | Clacu06g0606 | Clacu-Chr6:6978507 | 1.80E-198 | tandem |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g486 | . | . | Bda03g00890 | . | Bpe04g00834 | . | Bma04g00786 | . | Cmo08g01122 | Cmo17g00225 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla06g00581 | Cam06g0619 | Cec06g0621 | Cco06g0627 | Clacu06g0606 | Cmu06g0599 | Cre06g1367 | . | . | . | Cone4ag0238 | . | . | . | . | . | . | . | . | . | . | . | . | Sed01g3969 | . | . | Cma08g01145 | Cma17g00239 | Car08g01028 | Car17g00217 | Cpe12g00201 | . | Bhi12g01713 | Tan06g2525 | Cmetu01g1582 | Lac12g2283 | Hepe03g0194 | . | Lcy13g0279 | . | . | . | . | . | . | . | Lsi09g01323 | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000717 | 1 | 5 | 2 | 3 | 1 | 3 | 2 | 4 | 3 | 4 | 3 | 3 | 3 | 3 | 5 | 4 | 3 | 1 | 2 | 3 | 4 | 3 | 4 | 4 | 5 | 4 | 2 | 7 | 2 | 4 | 97 |