Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0608 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGATTAGGAGGCGCCGGTTCTTCGGGCTCACGCTTGCTTAATGCAAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGTTATTGTTGCCTCATCGTAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTGTGGATGAGAGTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGGTTTAATCAACAGGATGGATGTGGATGGTTTACGAAGAAATATGGACACCTTAGATGTCTTTGAGTTCAACGAATATGATGAAATTGATGGCGAGACTTTTCGGAGGAAGCATTTTAATGACAGTGGAGAAAGACGGTTTGTTGGTTCCATGAAACTGCCTCAAATGGGCGTTGAGAGGGAATTTGGAACCGCTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCTGAACAAACCAATAGCTTTGATCGGGACAGGCCTCCCAGAAAGATTAACTATGACTCAGATAATGACGGACCTCAACTCCCAACACCCTTGTTGAGAGATAAGTTTAGGGGTCATTCTGATGAAGCAATCAGGGTTCAGGGAAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAAAATGTGAGTGGTGCTTCCGATATATATGATCATCGCAAATTAGAAGAAAGTAGAAAGAGTCTAAGGACTGAAGATACTCTGAAGAGGAAAGTGTTAGTTTCTTCTTCACTTCACCCAGAAACTAAGCCCAATGTGAAAGAGGATATCTTTTCTAAGCCAGAGAAAGACCATACAGATTTTCAAACTTCAGCATCAACAAAAAATGTAAAGGGTTGCAGTTGGGATTCAGGGGACAGTAGTGTGTCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCACAAATCCACCAAGAAGGCAAGTTGTGAAGTTGATAAAATTCCATGTGAAGAAACTCCCCCAAGTACAGCAAAGGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATCGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTCCAAAAGCAATTAAACGAAGAAGGAGCAGAGGCTAAACCTAGTGCTGATGGTTCATTTACACCAATATCAGATGATATTCTTAGTCAATTAACCAGGAAAACTAGAAAGAAAATTGAGAAAGAATGGAAAAATAAGCAGAGAGATGATAGTGACAGTGAAAATGCTAAAGAAGCAAGCGCACTAAGATCTGCTGGTACCAAAAATGACATGGACAGCATGGACAGTGACAGCAATGAGGAAAAGTTAAGTTCTTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGACCGAGAATGGTTTTCCCACTGTCAACTCCAAAGGTCAAAGTTCTAGTAAGTATTCGCGTGATACCATTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAGTAGGGGATTAGATTCAGAGAATGATGGATATGTTCCATATACTGGTAAAAGGACTCTGCTTTCCTGGCTTATCGATTCTGGAACGGTGCAGTTGAGTCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACCAGAGATGGCATCCATTGCGGTTGCTGTAGCAAAATCCTAACTGTCTCCAAGTTTGAGATACATGCTGGAAGCAAATTACGCCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCTCTTCTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCGAAACGCCTCAGTTTCCACACGGTTGAAATTGATGGTGATGATCCGAATGATGACACATGTGGCATCTGCGGAGATGGTGGAGACTTAATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGATATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAGTGTTGATATTTCTCAGGGAGACAATACCATTGTTCCTGAGATATCTACTTGCATGTTATGCGAGAAAAAATTTCATGAGTCCTGCAATCTTGAGATGGATACTTCTGTTCATTCCAATGCTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGCTTTTTGAGAGTTTGCAGAAGCATCTTGGGGTGAAACATGAATTAGATGCAGGATTCTCGTGGTCTCTTATCCGTAGAACAAGTGAAGATTCGGATGTATCTGTTCGTGGACTTTCTCAAAGGATCGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGCTAAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGTACACGCCATATTTATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCAATTGAATCTGCTCTCCGCGTGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCACACTTGGAGTGTGATTTTTGGCTTTAGTCCTCTGGAGCAATCACTCAAGCAAGAAATGAGACTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGCTGTTAATCCAAGAGACATTTGTCGAGGAGAATACTTCTACTGGCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTAAGTAGTCCTAAGATGGATACAGAGACCTCATCTGGCCATGAACCTCAAAGTTGTGATGACACTGAACAGCATCACTCCAAAGAGAAAAGAAATGAAGCAGCTGTCACTAAACCAAATCCTGAATCCTTGTCTGTTTCTCTAAATGATACTTCTGCGGCAAATAGTCCTCTGGATGCATTTTGTGAAGTTAAAAAGTCATGTTCTCCAATGCAAACTGTAAATTCGGATTGGGATTCTGGTGATAAAGTTAAATGTTCGTCTCGATCTGATTCACCTGACTCTCTTCAACGCAACATTAAGCCAGGAACTCAGCATGATATAGAGGACCATGTGCAGGTCACTTCCCAATGTATGGAAGCTGATACATCTTCAGACGGATTTCTTGAACCTAAGGTTAAAGTTTCAGATGAAGGAATCATTTGTTCCAATTCTCATGCTGGGCATGAGTTGGCTGACTCCGGTTCTGAGAAGAAATCTTTTCCTCCTGCAATAGGCAATGGCATGGATGAGTTTGTAAATGACATTCGCGTAGTGGATTCTCCTGAAGATGATAAGTCATTCAATAAGATTAATGGTCATGAATTTTGTGAAGACGATGTCCATGCTAATGCTCTTAAACCTGCTCAGTCGGTTGAGAATCCACTTGTCTCTAATGCTAGTTTATGTGGCACTAATGGACACCCCTACGAAACTACATCTGATTGCAAAAACGCAAGACCTTATGGGAAAGAAACTGTTTCTGATGGAATTTGTGACAGTGAAAATTCTCCACAGTCATGTGGGGCAAAAACCAGAGGTGATTCACAGGAAGAGAAAGCTGAATCTGCCCTGGAGTTAACAGAGGTGCCCTTGATGGAAGTAGGCATGGTTCAATTCACCCTTTCTCTTCTGAAATTGCTGCTTTCGAACATGAACACATTCATTATGCTGGGTGGTTTGGAAGCTCAGACTTCACGGTCGACGATTCGATTTTCTGTCGAAGACGACTCCGATTACAACTTACTGGTGGAGGAAGCCGGAAAAACCCAAGAGAGTTGTATCAAAGGAGAAGAAATGATGGGGAAGAGATCGGAAAGTGCAAAGTGTTGCAGAGTGAATTTAGGGGGTTATTATTTGGGACTGAGGAACTGA 4227 41.9 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSGSRLLNAKKEKKRPRLVLSDSGSSDELLLPHRRRVGPETIRVCNGLNSFGKDVVDESGSIRKKDRLQYVKRNDDGLINRMDVDGLRRNMDTLDVFEFNEYDEIDGETFRRKHFNDSGERRFVGSMKLPQMGVEREFGTASSRHALVDKRKNLYAEQTNSFDRDRPPRKINYDSDNDGPQLPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDIYDHRKLEESRKSLRTEDTLKRKVLVSSSLHPETKPNVKEDIFSKPEKDHTDFQTSASTKNVKGCSWDSGDSSVSLKPRKKVVEAHKSTKKASCEVDKIPCEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIEKEWKNKQRDDSDSENAKEASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLTENGFPTVNSKGQSSSKYSRDTIVKSSSGSNSRILHGRRGRKLGLLVRGSSRGLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDISQGDNTIVPEISTCMLCEKKFHESCNLEMDTSVHSNASVTSFCGKNCRELFESLQKHLGVKHELDAGFSWSLIRRTSEDSDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRVLKVEKLIIPAIAELMHTWSVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETFVEENTSTGSGAKQTDCRSTELSSPKMDTETSSGHEPQSCDDTEQHHSKEKRNEAAVTKPNPESLSVSLNDTSAANSPLDAFCEVKKSCSPMQTVNSDWDSGDKVKCSSRSDSPDSLQRNIKPGTQHDIEDHVQVTSQCMEADTSSDGFLEPKVKVSDEGIICSNSHAGHELADSGSEKKSFPPAIGNGMDEFVNDIRVVDSPEDDKSFNKINGHEFCEDDVHANALKPAQSVENPLVSNASLCGTNGHPYETTSDCKNARPYGKETVSDGICDSENSPQSCGAKTRGDSQEEKAESALELTEVPLMEVGMVQFTLSLLKLLLSNMNTFIMLGGLEAQTSRSTIRFSVEDDSDYNLLVEEAGKTQESCIKGEEMMGKRSESAKCCRVNLGGYYLGLRN 1408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7013823 7024540 + ClG42_06g0060800.10 Clacu06g0608 251256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 490 504 - -
Clacu06g0608 1408 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 1045 1067 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 368 382 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 472 489 - -
Clacu06g0608 1408 PANTHER PHD FINGER PROTEIN 12 304 1121 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 1280 1304 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 307 330 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 1015 1082 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 44 58 - -
Clacu06g0608 1408 Pfam Domain of unknown function (DUF7028) 369 436 IPR054292 -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 515 564 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 1103 1133 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 315 330 - -
Clacu06g0608 1408 CDD PHD2_CHD_II 708 746 - -
Clacu06g0608 1408 SMART PHD_3 707 747 IPR001965 -
Clacu06g0608 1408 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Clacu06g0608 1408 Pfam PHD-finger 708 746 IPR019787 -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 472 565 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 1281 1296 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 1015 1044 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 194 220 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 194 210 - -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 363 382 - -
Clacu06g0608 1408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 807 IPR013083 -
Clacu06g0608 1408 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Clacu06g0608 1408 MobiDBLite consensus disorder prediction 30 62 - -
Clacu06g0608 1408 Pfam Tify domain binding domain 630 680 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0608 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1999 Clacu-Chr2:33447021 Clacu06g0608 Clacu-Chr6:7013823 2.20E-86 transposed
Clacu05g2256 Clacu-Chr5:30978512 Clacu06g0608 Clacu-Chr6:7013823 8.40E-68 transposed
Clacu01g2647 Clacu-Chr1:36644009 Clacu06g0608 Clacu-Chr6:7013823 8.20E-09 transposed
Clacu11g1946 Clacu-Chr11:30411163 Clacu06g0608 Clacu-Chr6:7013823 2.30E-110 transposed
Clacu06g0608 Clacu-Chr6:7013823 Clacu09g0704 Clacu-Chr9:6134612 1.50E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47866 PF16135 TDBD 4.40E-22 No_clan Clacu TR